Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1619 | ATGGCCAAGCTGGTTGTGGAAATTCTTGATGCAAGCGACCTCATGCCCAAAGATGGCCAAGGCTCTGCAAGTCCCTTTGTGGAAGTCGATTTTGATAAGCAGCCTCTAAGGACACAGACCAAGCACAAGGATCTCAACCCTACTTGGAATGAGAAGCTCGTCTTCGACATCGATAATCCTAGAGACCTTCCCAATAAGACCATTGATGTGATTGTCTACAACGACCGCAAAGGCGGCCACCACAAGAACTTCCTTGGCCGCGTTAGGATCTCCGGGGCCTCACTGCCATCATCCGAGTCCCAAGCCACCGTGCAGCGGTATCCTCTTGACAAGCGTGGCCTCTTTTCTCACATCAAAGGCGATATCGCGCTCAGGATGTATCCTGTTCTTGAGGCTAGTTCCTTCTTTGTGGCACCGAATGAGAATGGGGTTGAGTCTGAGAGTAGAGTCGGTGCTGATCATAAGGCTAATGATGAAGGGGAGGTCTATGAGAAGAAGAAGAAGAAGAAGGAAAAGGAAGTGAGGACTTTTCACTCCATTGGAACGGGGTCTGCTGCTCCACCTCCGGTGTTCCCTGGATTCGGGTTTGGGGGAAATCAAATGAAGGAAAAGCCAGTGGCTGTTGAAACAAGAAGCGATTTCGCCCGGGCTGCTGGCCCTTCAGCCGCAATGCATATGCAGATTCCTAGGCAAAATCCAGAATTCGGGTTGGTTGAGACTAGGCCACCGGTGGCGGCGCGTATGGGCTACAGAGGAGCTAACAAGACTGCGAGTACTTACGATCTAGTTGAGCAGATGCACTACCTGTATGTGACTGTTGTGAAGGCCAGAGACCTCCCAGTCATGGACATCACTGGAAGCTTGGACCCCTATGTGGAAGTGAAGCTTGGGAACTACAAGGGCACCACTAAACACTTGGAGAAGAACCAGAACCCAGTCTGGAATCAGATATTCGCCTTCTCAAAGGAGAGGTTGCAGTCCAATTTGATTGAAATAATAGTGAAGGACAAGGATATTGGGAAGGATGATTTTGTGGGTAGAGTTACTTTTGAACTTTCAGACGTGCCCGTTCGGGTGCCACCAGACAGTCCTCTGGCTCCTCAATGGTATAAATTGGAGGACAGGAGGGGAGTGAAGACTGGAGGAGAGGTGATGCTGGCGGTTTGGATGGGAACACAGGCGGATGAGTGCTACCCCGACGCATGGCATTCTGATGCCCACTCCATCAGCCATGAAAACCTTGCTTATACGCGATCCAAGGTCTATTTCTCACCAAAGCTGTATTACCTCAGAGTGCATATCATCGAAGCTCAGGACCTTGTTCCCTGGGAAAAAGGCCGGGTTGTTCAAGCATCTGTTAAGATACAGCTTGGGAATCAGGTGAGGGCCACGAAGCCTTTCCAGGCGCGCTCCTTGAGTGCAGGGTGGAACGAGGAGTTCATGTTCGTGGCATCGGAGCCCTTTGAGGATTTCATTATAATCTCGGTTGAGGATAGGGTAGGACCTGGTAAGGACGAGATCTTGGGAAGATTGGTCATTCCTATCAGAGATGTACCGCCCAGAATTGACTCCACCAAGCTCCCTGATGCTCGCTGGTTCAACCTCCATAAGCCTTACTTCGGGGAAGGTGAGAGTGAGAAGAAGAAAGAGATCAAATTCTCCAGCAAGATCTACCTTCGCCTTTGTTTAGAAGCAGGTTACCATGTCCTTGATGAGTCCACTCATTTTAGCAGTGATCTCCAGCCCTCATCAAAACTCCTTAGAAGACCCAGAATTGGAATCCTTGAAGTTGGGATCCTGAGTGCTCAGAACCTGCTGCCAATGAAGAGCAAGAGCGGGAGAACCACCGACGCCTACTGTGTAGCCAAGTATGGAAACAAATGGGTTCGAACCAGAACACTTCTGGACACCTTGGCTCCTAGGTGGAACGAGCAGTACACTTGGGAAGTCCATGATCCCTGTACTGTAATCACTATTGGCGTTTTCGATAATTGCCACATCAATGGAAGTAAGGATGACTCAAGAGATCAGAGAATAGGGAAAGTGAGAATCAGGCTATCGACTTTGGAAACCAATCGGATTTACACCCATTACTATCCACTGCTTGTTCTTTCACCTTCAGCTGGGTTGAAGAAACATGGAGAACTTCAGTTGGCTCTGAGGTTTACATGCACTGCGTGGGTGAATATGGTTGCACAATATGGCATGCCCTTGCTGCCCAAAATGCATTATGTCCAGCCAATCCCGGTGTTGCAAATTGATGCGCTACGCCATCAGGCAATGCAGATAGTTGCAGCAAGACTTGCCCGAGCAGAGCCACCTCTCAAGCGAGAGATTGTAGAGTACATGCTGGATGTAGATTATCATATGTTCAGCCTGAGAAGAAGCAAAGCCAACTTCTGCCGCATGATGTCCCTTCTTTCTGGAATTACAGCTGTTTGCAAGTTGTACAACGATATCTGCAACTGGAGAAACCCGGTGACGACATGTCTCGTGCACATCTTGTTCCTGATACTGGTCTGCTACCCTGAGCTCATCTTGCCGACAGTCTTCTTCTACCTTTTTGTTATTGGGGTATGGAACTATAGGTACCGACCAAGGCACCCACCTCACATGGACGCTCGTCTTTCCCAAGCTGAGTTTGCCCACCCAGATGAGCTGGAGGAGGAATTCGACACGTTCCCATCAACTCAGCCATCAGATAGGATTAGGATGAGGTATGACCGGCTGCGCCATGTCTCTGGCAGGGTGCAGACAGTGGTTGGAGATTTGGCGACTCAAGGGGAGAGAGCTCAGGCGATACTAAGCTGGCGAGACCCAAGGGCTACAGCCATCTTCCTCATCTTCTCATTGATCTGGGCAATTTTCATTTACATAACTCCATTCCAGGTTGTTGCGGTGCTCGTTGGTCTCTACTTGCTTCGGCATCCCCGGTTCAGGTCCAAGATGCCCTCTGTGCCAGTCAATTTCTTCAAGAGATTGCCATCTAAGTCAGATATGCTTCTATGA | 3009 | 0.4955 | MAKLVVEILDASDLMPKDGQGSASPFVEVDFDKQPLRTQTKHKDLNPTWNEKLVFDIDNPRDLPNKTIDVIVYNDRKGGHHKNFLGRVRISGASLPSSESQATVQRYPLDKRGLFSHIKGDIALRMYPVLEASSFFVAPNENGVESESRVGADHKANDEGEVYEKKKKKKEKEVRTFHSIGTGSAAPPPVFPGFGFGGNQMKEKPVAVETRSDFARAAGPSAAMHMQIPRQNPEFGLVETRPPVAARMGYRGANKTASTYDLVEQMHYLYVTVVKARDLPVMDITGSLDPYVEVKLGNYKGTTKHLEKNQNPVWNQIFAFSKERLQSNLIEIIVKDKDIGKDDFVGRVTFELSDVPVRVPPDSPLAPQWYKLEDRRGVKTGGEVMLAVWMGTQADECYPDAWHSDAHSISHENLAYTRSKVYFSPKLYYLRVHIIEAQDLVPWEKGRVVQASVKIQLGNQVRATKPFQARSLSAGWNEEFMFVASEPFEDFIIISVEDRVGPGKDEILGRLVIPIRDVPPRIDSTKLPDARWFNLHKPYFGEGESEKKKEIKFSSKIYLRLCLEAGYHVLDESTHFSSDLQPSSKLLRRPRIGILEVGILSAQNLLPMKSKSGRTTDAYCVAKYGNKWVRTRTLLDTLAPRWNEQYTWEVHDPCTVITIGVFDNCHINGSKDDSRDQRIGKVRIRLSTLETNRIYTHYYPLLVLSPSAGLKKHGELQLALRFTCTAWVNMVAQYGMPLLPKMHYVQPIPVLQIDALRHQAMQIVAARLARAEPPLKREIVEYMLDVDYHMFSLRRSKANFCRMMSLLSGITAVCKLYNDICNWRNPVTTCLVHILFLILVCYPELILPTVFFYLFVIGVWNYRYRPRHPPHMDARLSQAEFAHPDELEEEFDTFPSTQPSDRIRMRYDRLRHVSGRVQTVVGDLATQGERAQAILSWRDPRATAIFLIFSLIWAIFIYITPFQVVAVLVGLYLLRHPRFRSKMPSVPVNFFKRLPSKSDMLL* | 1003 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1619 | 1002 | Pfam | Plant phosphoribosyltransferase C-terminal | 847 | 1002 | IPR013583 | - | |
| Vvi18g1619 | 1002 | CDD | C2D_MCTP_PRT_plant | 594 | 719 | IPR047255 | - | |
| Vvi18g1619 | 1002 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 593 | 724 | IPR035892 | - | |
| Vvi18g1619 | 1002 | PANTHER | PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 | 3 | 1002 | IPR047259 | - | |
| Vvi18g1619 | 1002 | CDD | C2C_MCTP_PRT_plant | 429 | 582 | IPR047258 | - | |
| Vvi18g1619 | 1002 | FunFam | C2 domain-containing protein | 576 | 726 | - | - | |
| Vvi18g1619 | 1002 | ProSiteProfiles | C2 domain profile. | 576 | 699 | IPR000008 | - | |
| Vvi18g1619 | 1002 | Gene3D | C2 domain | 577 | 724 | IPR035892 | - | |
| Vvi18g1619 | 1002 | Gene3D | C2 domain | 252 | 390 | IPR035892 | - | |
| Vvi18g1619 | 1002 | Gene3D | C2 domain | 411 | 562 | IPR035892 | - | |
| Vvi18g1619 | 1002 | CDD | C2B_MCTP_PRT_plant | 268 | 392 | IPR047257 | - | |
| Vvi18g1619 | 1002 | ProSiteProfiles | C2 domain profile. | 250 | 370 | IPR000008 | - | |
| Vvi18g1619 | 1002 | MobiDBLite | consensus disorder prediction | 147 | 170 | - | - | |
| Vvi18g1619 | 1002 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 268 | 406 | IPR035892 | - | |
| Vvi18g1619 | 1002 | Gene3D | C2 domain | 1 | 129 | IPR035892 | - | |
| Vvi18g1619 | 1002 | CDD | C2A_MCTP_PRT_plant | 3 | 128 | - | - | |
| Vvi18g1619 | 1002 | ProSiteProfiles | C2 domain profile. | 406 | 529 | IPR000008 | - | |
| Vvi18g1619 | 1002 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 428 | 584 | IPR035892 | - | |
| Vvi18g1619 | 1002 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 128 | IPR035892 | - | |
| Vvi18g1619 | 1002 | SMART | C2_3c | 268 | 364 | IPR000008 | - | |
| Vvi18g1619 | 1002 | SMART | C2_3c | 3 | 104 | IPR000008 | - | |
| Vvi18g1619 | 1002 | SMART | C2_3c | 429 | 527 | IPR000008 | - | |
| Vvi18g1619 | 1002 | SMART | C2_3c | 594 | 698 | IPR000008 | - | |
| Vvi18g1619 | 1002 | Pfam | C2 domain | 593 | 701 | IPR000008 | - | |
| Vvi18g1619 | 1002 | Pfam | C2 domain | 429 | 534 | IPR000008 | - | |
| Vvi18g1619 | 1002 | Pfam | C2 domain | 268 | 371 | IPR000008 | - | |
| Vvi18g1619 | 1002 | Pfam | C2 domain | 3 | 100 | IPR000008 | - | |
| Vvi18g1619 | 1002 | ProSiteProfiles | C2 domain profile. | 1 | 107 | IPR000008 | - | |
| Vvi18g1619 | 1002 | FunFam | C2 domain-containing protein | 263 | 407 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g1619 | Vvi-Chr18 | 20836469 | 20839477 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1619 | 1 | 1002 | Lipid Metabolism Gene Families | AT1G22610 | 70.155 | 0.0 | 1475 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1619 | - | - | vvi:100264197 | 1990.31 |