Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1620 ATGGAAGACATAGAAGACTTGCTGGTTGGCAATGGAGTTGGTGGAGCCCCTCCTGGGTTTCGACTACCGTTGGCCTCTGTTGGGTTTAAGCCCAAGCAGAATAAAAACAAACCCAACCTGGAAAAGAAATCTCATATCCAAGATTATATAATTCCGGGCACCCAGACAATTTATATGAAGACTTTTGGGTGCTCGCATAACCAGAGCGACAGTGAATATATGGCAGGTCAGCTTGCAGCATTTGGTTATGTATTAAGTGACAATCCTGAGGAGGCAGACTTGTGGCTGATAAACACGTGCACAGTTAAGTCCCCAAGTCAGTCTGCTATGGACACCCTAATAACTAAAGGTAGAAGTTCAAAAAAGCCTCTGGTAGTGGCAGGGTGTGTTCCTCAAGGAAGTAGAGACTTGAAAGAGCTAGAAGGAGTCAGTATAGTTGGAGTCCAGCAAATTGACCGTGTGGTTGAGGTTGTAGAAGAGACTTTAAAAGGTCATGAGGTGCGACTTTTGAACCGCAAGACGCTGCCAGCACTCGACCTCCCAAAGGTGAGAAAGAACAAGTTTGTTGAGATTCTTCCAATTAATGTTGGTTGTTTAGGTGCTTGCACTTATTGCAAGACAAAGCATGCTCGTGGTCATTTAGGAAGCTACACTGTTGACAGCCTTGTAAGGCGTGTAAGAACAGTTATAGCTGATGGAGTGAAGGAGATATGGTTGAGTAGTGAAGATACTGGAGCATATGGTCGTGACATTGGGGTTACTCTTCCAATTTTGTTGAATGCTATTGTTTCTGAACTTCCCCCTGATGGGGGCACAATGCTTCGCATTGGAATGACTAATCCTCCTTATATTCTGGAGCACTTGAAAGAGATGGCAGTTGTTTTGCGTCACCCGTGTGTATACTCCTTTCTTCATGTACCAGTCCAATCTGGGAGTGATGCCATCTTGAGTGCTATGAATCGAGAGTATACTGTAACTGAGTTCAGGACTGTGGTAGACACCTTGACTGAACTTGTTCCAGGAATGCAGATTGCAACTGATATAATATGCGGTTTTCCTGGTGAAACAGATGAAGAATTTGCTCAAACAGTCAGCCTCATACAGGAGTATAGGTTCCCCCAAGTTCATATTTCTCAATTCTATCCTCGGCCTGGGACACCTGCGGCCAGGATGAAAAAGGTCCCAAGTGCTGTAGTGAAGAAACGGAGTCGTGAATTGACTTCTATTTTTGAAGCTTTTACACCATATAATGGAATGGAAGGCAGAGTGGAAAGAATATGGATAAGTGAAATTGCAACTGATGGAATTCACCTGGTTGGCCATACGAAGGGATATATGCAGGTGCTTGTGGTTGCACCACGAAGCCTGATGGGAACGTCAGCTATTGTGAAAATAACATCTGTGGGAAGGTGGTCGGTTTTCGGAGAACTGATTGAGACTCTCAACCAAGTAAATGATAATATATCTTTGAATGAGGAAAAGTTCAGTCTGGGCAAATGTTCTCCCTGCTCTGTCCCAGGTGAAATTTGTGCGTGTTCAAGGGAGGCAGAACCTTGTGCTTGTGAACCACAAAGCTGTGAAGGAAAAATTAGTATGGAGGAAGGCTCTGTTTCAAGGAAGGACATGTTGCCAGAAAATCAAAACCTATTCAAATGGCTACTAAGGAGGCGGAAGAACCACGGACAGAAAAGGATAGAGAATGGAATTGCATGGGGATCCAAGGAAAAGGAAGAACGTGACCGAGGATGCATGAACCATTGGGGTCTAGTTGATAGGGTTCTTCTGGGTGGAATATTTGTGAGCATCTTGACAATTGTAGCTTTAATTTTACATCTAGGATTTTGGTAG 1848 0.4399 MEDIEDLLVGNGVGGAPPGFRLPLASVGFKPKQNKNKPNLEKKSHIQDYIIPGTQTIYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVRRVRTVIADGVKEIWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLRHPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGETDEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPYNGMEGRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVGRWSVFGELIETLNQVNDNISLNEEKFSLGKCSPCSVPGEICACSREAEPCACEPQSCEGKISMEEGSVSRKDMLPENQNLFKWLLRRRKNHGQKRIENGIAWGSKEKEERDRGCMNHWGLVDRVLLGGIFVSILTIVALILHLGFW* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1620 615 ProSiteProfiles Radical SAM core domain profile. 184 417 IPR007197 GO:0003824|GO:0051536
Vvi18g1620 615 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 56 473 IPR005839 GO:0006400|GO:0016740|GO:0051539
Vvi18g1620 615 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase 56 175 - -
Vvi18g1620 615 SMART MiaB 188 409 IPR006638 GO:0003824|GO:0051536
Vvi18g1620 615 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 55 163 IPR013848 GO:0035596|GO:0051539
Vvi18g1620 615 PANTHER RADICAL SAM PROTEINS 1 611 - -
Vvi18g1620 615 CDD Radical_SAM 192 397 - -
Vvi18g1620 615 Pfam Radical SAM superfamily 195 367 IPR007197 GO:0003824|GO:0051536
Vvi18g1620 615 Pfam Uncharacterized protein family UPF0004 57 135 IPR013848 GO:0035596|GO:0051539
Vvi18g1620 615 Gene3D - 56 175 IPR038135 -
Vvi18g1620 615 Gene3D tm_1862 like domain 186 416 IPR023404 -
Vvi18g1620 615 NCBIfam tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase 57 481 IPR006466 GO:0035598|GO:0035600
Vvi18g1620 615 ProSitePatterns Methylthiotransferase radical SAM domain signature. 192 212 IPR020612 GO:0051539
Vvi18g1620 615 ProSiteProfiles TRAM domain profile. 417 479 IPR002792 -
Vvi18g1620 615 SFLD Radical SAM 133 426 IPR007197 GO:0003824|GO:0051536
Vvi18g1620 615 FunFam threonylcarbamoyladenosine tRNA methylthiotransferase isoform X2 188 418 - -
Vvi18g1620 615 SUPERFAMILY Radical SAM enzymes 178 412 - -
Vvi18g1620 615 SFLD B12-binding domain containing 133 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1620 Vvi-Chr18 20840022 20865341 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1620 K15865 - vvi:100258899 1240.71