Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0822 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0826 . . . . . . Aed6g0151 . . . . . . . . . . . Apr7g1778 . . . . . . . Bva08g01128 Bva11g01309 . . Cca06g00996 . . . . . . . . . Gma01g00127 Gma09g01930 . . Gso1g0129 Gso1g0129 . . . . . . . . . . . . . . Lapu2g00861 . Lasa2g03739 . . . . . . . . . Lja2g0810 . Mal6g0664 . Mepo5g01350 . Mesa17g01470 . . . Mtr5g1209 . . . Phco4g00540 . . . . . Pste1g00771 . . . . . Pumo8g01413 . Pvu2g1412 . Rops1g01270 . . . Spst2g01207 . Ssu2g1975 . . . Tpr2g1455 . Trre9g01817 . Tsu05g01224 . Vian10g01073 . Vifa1g05901 . Vimu7g03465 . Viun2g01461 . Vivi2g02445 . Vra11g1042 .
Vvi2g0827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa2g3145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car07g01922 . Cca11g00834 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g2790 . Mal5g2768 . . . . . . . Mtr8g2040 . . . . . . . Psa4g2862 . . . . . . . . . . . . . . . . . Ssu5g0952 . . . Tpr4g4714 . . . Tsu04g02927 . . . . . . . . . . . .
Vvi2g0829 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car07g01923 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2771 . . . . . . . Mtr8g2038 . . . . . . . Psa4g2863 . . . . . . . . . . . . . . . . . . . . . Tpr4g4715 . . . Tsu04g02926 . . . . . . . . . . . .
Vvi2g0830 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car07g01924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g2781 . . . . . . . Mtr8g2037 . . . . . . Psa2g3146 . . . . . . . . . . . . . . . . . . . . . . Tpr4g4717 . . . Tsu04g02921 . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0822 Chr2 8625611 8625775 -
Vvi Vvi2g0823 Chr2 8633135 8634435 -
Vvi Vvi2g0824 Chr2 8693522 8702959 -
Vvi Vvi2g0825 Chr2 8734266 8734785 -
Vvi Vvi2g0826 Chr2 8739817 8745455 +
Aed Aed6g0151 Chr6 1343787 1349771 +
Apr Apr7g1778 Chr7 25129929 25136114 -
Bva Bva08g01128 Chr08 5796033 5801133 -
Bva Bva11g01309 Chr11 13402151 13407425 +
Cca Cca06g00996 Chr06 23728252 23734812 -
Gma Gma01g00127 Chr01 1429912 1435617 +
Gma Gma09g01930 Chr09 44920117 44926321 -
Gso Gso1g0129 Chr1 1443731 1450497 +
Gso Gso1g0129 Chr1 1443731 1450497 +
Lapu Lapu2g00861 Chr2 7911567 7918003 -
Lasa Lasa2g03739 Chr2 551820067 551824029 +
Lja Lja2g0810 Chr2 7431629 7437183 +
Mal Mal6g0664 Chr6 9236794 9242895 +
Mepo Mepo5g01350 Chr5 13910117 13917290 +
Mesa Mesa17g01470 Chr17 19877594 19883709 +
Mtr Mtr5g1209 Chr5 12317226 12324304 +
Phco Phco4g00540 Chr4 3938080 3943363 -
Pste Pste1g00771 Chr1 2412925 2418027 +
Pumo Pumo8g01413 Chr8 46798983 46808556 -
Pvu Pvu2g1412 Chr2 26942731 26948742 +
Rops Rops1g01270 Chr1 29039440 29044722 -
Spst Spst2g01207 Chr2 10674984 10680425 +
Ssu Ssu2g1975 Chr2 72489500 72495270 -
Tpr Tpr2g1455 Chr2 17133818 17140372 +
Trre Trre9g01817 Chr9 17148810 17154596 +
Tsu Tsu05g01224 Chr05 10919133 10925936 +
Vian Vian10g01073 Chr10 12224826 12229947 +
Vifa Vifa1g05901 Chr1 924742511 924746476 -
Vimu Vimu7g03465 Chr7 29303521 29309361 +
Viun Viun2g01461 Chr2 25011479 25016622 -
Vivi Vivi2g02445 Chr2 112743983 112748953 -
Vra Vra11g1042 Chr11 9487509 9493516 +
Vvi Vvi2g0827 Chr2 8757258 8762553 +
Psa Psa2g3145 Chr2 362429600 362432432 +
Vvi Vvi2g0828 Chr2 8764178 8764669 +
Car Car07g01922 Chr07 21965106 21968899 +
Cca Cca11g00834 Chr11 16181688 16182414 +
Lja Lja4g2790 Chr4 46081818 46082715 -
Mal Mal5g2768 Chr5 82270981 82271475 +
Mtr Mtr8g2040 Chr8 30278267 30280454 -
Psa Psa4g2862 Chr4 228604830 228606004 -
Ssu Ssu5g0952 Chr5 27783255 27783737 -
Tpr Tpr4g4714 Chr4 55549164 55549947 +
Tsu Tsu04g02927 Chr04 35579932 35580426 -
Vvi Vvi2g0829 Chr2 8765948 8766279 -
Car Car07g01923 Chr07 21972749 21975752 -
Mal Mal5g2771 Chr5 82311507 82311835 -
Mtr Mtr8g2038 Chr8 30268292 30270952 +
Psa Psa4g2863 Chr4 228688553 228690807 +
Tpr Tpr4g4715 Chr4 55554979 55558652 -
Tsu Tsu04g02926 Chr04 35571522 35574821 +
Vvi Vvi2g0830 Chr2 8791757 8792733 -
Vvi Vvi2g0831 Chr2 8806898 8811044 -
Car Car07g01924 Chr07 21985000 21987695 -
Mal Mal5g2781 Chr5 82700390 82702292 -
Mtr Mtr8g2037 Chr8 30227469 30229791 +
Psa Psa2g3146 Chr2 362449596 362452268 -
Tpr Tpr4g4717 Chr4 55579786 55582668 -
Tsu Tsu04g02921 Chr04 35521194 35524020 +
Pste Pste1g00771 Chr1 2412925 2418027 +