Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0952 ATGTCATTGCTCGAAAGCGACCAAATCAAGCAACTCAACGACATATTCAAGCGCTTCGACATGGACTCGGACGGCAGCCTGACCCACCTGGAGCTCGCGGCGCTCCTCCGGTCCCTCGGCATCAAACCCACTGGGGACGAAATCTACGCCCTACTTTCCAACATGGACGAAAATGGCAACGGATACATCGAATTCGACGAGCTTGTGCATGCGATCATGCCTGACATCAACGAGAACGTGCTCATCAACCAGGAGCAGCTGTTGGAAGTGTTCCGGTCCTTCGACCGAGACGGCAACGGCTACATCACGGCGTCCGAGCTCGCGGGATCGATGGCGAAGATGGGTCACCCACTCACCTACCGCGAGCTCGCTTCCATGATGGCCGAGGCCGATAGCAATGGCGATGGCGTTATTAGCTTCAACGAGTTTGCCACCCTCATGGCCAAATCTGCCGCTGATTTCCTTGGTATCAAGGTCGCCTAG 483 0.5611 MSLLESDQIKQLNDIFKRFDMDSDGSLTHLELAALLRSLGIKPTGDEIYALLSNMDENGNGYIEFDELVHAIMPDINENVLINQEQLLEVFRSFDRDGNGYITASELAGSMAKMGHPLTYRELASMMAEADSNGDGVISFNEFATLMAKSAADFLGIKVA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0952 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Ssu5g0952 160 Gene3D - 1 103 - -
Ssu5g0952 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Ssu5g0952 160 Gene3D - 104 157 - -
Ssu5g0952 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Ssu5g0952 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Ssu5g0952 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Ssu5g0952 160 SUPERFAMILY EF-hand 4 148 IPR011992 -
Ssu5g0952 160 Pfam EF-hand domain pair 10 72 IPR002048 GO:0005509
Ssu5g0952 160 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Ssu5g0952 160 SMART efh_1 122 150 IPR002048 GO:0005509
Ssu5g0952 160 SMART efh_1 11 39 IPR002048 GO:0005509
Ssu5g0952 160 SMART efh_1 47 75 IPR002048 GO:0005509
Ssu5g0952 160 SMART efh_1 86 114 IPR002048 GO:0005509
Ssu5g0952 160 PANTHER BNACNNG21080D PROTEIN 5 159 - -
Ssu5g0952 160 CDD EFh 86 148 IPR002048 GO:0005509
Ssu5g0952 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Ssu5g0952 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Ssu5g0952 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Ssu5g0952 160 PANTHER CALCIUM BINDING PROTEIN 5 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0952 Ssu-Chr5 27783255 27783737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0952 6 160 EF-hand Containing Proteins AT3G25600 80.000 9.22e-90 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0952 K13448 - gmx:100797705 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0952 5 27783255 27783737 Ssu5g0952 5 27783255 27783737 ECH