Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02927 ATGAACAAGAAGCACAACCAAGTGAAATTGGACGACGAACAAATAGCCGAATTACGCGAAATCTTTCGATCATTTGATCGAAACAACGACGGAACCCTAACGCAACTGGAACTAAATTCTCTTCTCCGATCGCTTGGTTTAAAACCAAGCGCTGAACAATTAGAAATATTCATACAAAGAGCAGACACAAACAGCAACGGACTCATTGAATTCTCGGAGTTCGTTTCGTTGGTTGCACCGGAGCTTTTGCCTGCAAAGTCTCCGTACACGGAGGAGCAACTTCGACAGCTGTTTGATATGTTTGATCGGGATGGAAATGGATTCATAACGGCCGCGGAATTGGCTCATTCTATGGCGAAATTAGGACATGCTTTGACGGCGGAGGAATTGACCGGAATGATAAAGGAAGCTGATACAGATGGTGACGGGATGATCAATTTTCAGGAGTTTGCTCAAGCGATTACTTCTGCTGCTTTTGATAATTCATGGACTTAA 495 0.4364 MNKKHNQVKLDDEQIAELREIFRSFDRNNDGTLTQLELNSLLRSLGLKPSAEQLEIFIQRADTNSNGLIEFSEFVSLVAPELLPAKSPYTEEQLRQLFDMFDRDGNGFITAAELAHSMAKLGHALTAEELTGMIKEADTDGDGMINFQEFAQAITSAAFDNSWT 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02927 164 Gene3D - 1 83 - -
Tsu04g02927 164 ProSiteProfiles EF-hand calcium-binding domain profile. 13 48 IPR002048 GO:0005509
Tsu04g02927 164 SUPERFAMILY EF-hand 9 156 IPR011992 -
Tsu04g02927 164 Gene3D - 84 162 - -
Tsu04g02927 164 PANTHER CALCIUM BINDING PROTEIN 6 164 - -
Tsu04g02927 164 ProSitePatterns EF-hand calcium-binding domain. 102 114 IPR018247 -
Tsu04g02927 164 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Tsu04g02927 164 SMART efh_1 129 157 IPR002048 GO:0005509
Tsu04g02927 164 SMART efh_1 93 121 IPR002048 GO:0005509
Tsu04g02927 164 SMART efh_1 53 81 IPR002048 GO:0005509
Tsu04g02927 164 SMART efh_1 17 45 IPR002048 GO:0005509
Tsu04g02927 164 ProSiteProfiles EF-hand calcium-binding domain profile. 125 160 IPR002048 GO:0005509
Tsu04g02927 164 ProSitePatterns EF-hand calcium-binding domain. 138 150 IPR018247 -
Tsu04g02927 164 ProSitePatterns EF-hand calcium-binding domain. 26 38 IPR018247 -
Tsu04g02927 164 Pfam EF-hand domain pair 91 154 IPR002048 GO:0005509
Tsu04g02927 164 Pfam EF-hand domain pair 17 77 IPR002048 GO:0005509
Tsu04g02927 164 PANTHER CALCIUM-BINDING PROTEIN CML18-RELATED 6 164 - -
Tsu04g02927 164 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
Tsu04g02927 164 CDD EFh 17 79 IPR002048 GO:0005509
Tsu04g02927 164 ProSiteProfiles EF-hand calcium-binding domain profile. 89 124 IPR002048 GO:0005509
Tsu04g02927 164 CDD EFh 93 155 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02927 Tsu-Chr4 35579932 35580426 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02927 9 163 EF-hand Containing Proteins AT1G32250 77.215 1.33e-84 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02927 K13448 - sspl:121758515 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02927 04 35579932 35580426 Tsu04g02927 04 35579932 35580426 ECH