Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0828 ATGAGCGTGGATGAACCGGTGAAGCTGGACGATGAGCAGATAGCGGAGCTACGAGAAATATTTCGATCATTCGATAGAAACAATGACGGAAGCCTAACGCAGCTGGAGCTGGGATCTTTGTTAAGATCATTAGGTCTGAAACCAACTCCAGAGCAGCTGGACGCCCTAAGTCAGAAAGCAGACAAGAACAGTAATGGCCTAATTGAGTTCTCAGAGTTCGTCTCACTTGTGGCGCCGGACCTTCTTCCAGCCAAGTCGCCATACACAGAGGAGCAGCTGAGACAGCTGTTTCGGATGTTTGATAGAGATGGCAATGGCTACATTACAGCAGCGGAGCTGGCGCACTCAATGGCCAAGCTTGGCCATGCACTCACTGCAGAAGAGCTGACAGGGATGATCAAAGAGGCAGACACTGACGGCGATGGGCGGATTAACTTTGAGGAGTTCTCTCAGGCGATAACCTCTGCAGCTTTTGATAATTCATGGGCCTAG 492 0.5041 MSVDEPVKLDDEQIAELREIFRSFDRNNDGSLTQLELGSLLRSLGLKPTPEQLDALSQKADKNSNGLIEFSEFVSLVAPDLLPAKSPYTEEQLRQLFRMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADTDGDGRINFEEFSQAITSAAFDNSWA* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0828 163 SUPERFAMILY EF-hand 8 154 IPR011992 -
Vvi2g0828 163 SMART efh_1 128 156 IPR002048 GO:0005509
Vvi2g0828 163 SMART efh_1 92 120 IPR002048 GO:0005509
Vvi2g0828 163 SMART efh_1 16 44 IPR002048 GO:0005509
Vvi2g0828 163 SMART efh_1 52 80 IPR002048 GO:0005509
Vvi2g0828 163 CDD EFh 92 154 IPR002048 GO:0005509
Vvi2g0828 163 PANTHER CALCIUM BINDING PROTEIN 10 152 - -
Vvi2g0828 163 Pfam EF-hand domain pair 90 153 IPR002048 GO:0005509
Vvi2g0828 163 Pfam EF-hand domain pair 16 76 IPR002048 GO:0005509
Vvi2g0828 163 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Vvi2g0828 163 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Vvi2g0828 163 ProSitePatterns EF-hand calcium-binding domain. 25 37 IPR018247 -
Vvi2g0828 163 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Vvi2g0828 163 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Vvi2g0828 163 FunFam Probable calcium-binding protein CML15 2 82 - -
Vvi2g0828 163 FunFam probable calcium-binding protein CML18 84 160 - -
Vvi2g0828 163 ProSitePatterns EF-hand calcium-binding domain. 61 73 IPR018247 -
Vvi2g0828 163 Gene3D - 2 81 - -
Vvi2g0828 163 Gene3D - 83 159 - -
Vvi2g0828 163 ProSiteProfiles EF-hand calcium-binding domain profile. 12 47 IPR002048 GO:0005509
Vvi2g0828 163 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0828 Vvi-Chr2 8764178 8764669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0828 1 163 EF-hand Containing Proteins AT1G32250 74.096 1.23e-85 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0828 K13448 - vvi:100241974 308.531