Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2790 ATGAGCAAGAAGCAAGCAGTGAATCTGGACGAGGAGCAGATCGCGGAGTTAAGAGAAATATTCCGATCATTCGACCGGAACAACGACGGCAGCCTGACGCAGCTGGAGCTGAGCTCGCTGCTGCGGTCGCTGGGGCTGAAACCTAGCGCGGAGCAGGTGGAAGGGTTCATCCAGAAGGCCGACACCAACAGCAACGGCCTGATTGAATTCTCCGAGTTTGTTGCGGTGGTGGCGCCGGAGCTTCTGCCGGCGAGGTCGCCGTACACGGAGGAGCAGCTGCGGCAGCTTTTCAGGGTGTTCGACCGCGACGGGAATGGGTTCATCACCGCGGCGGAGCTGGCTCACTCCATGGCCAAGCTCGGCCACGCTCTCACGGCGGAGGAGTTGACGGGGATGATCAAGGAGGCTGATGCGGATGGTGATGGTATGATCAGTTTCCAGGAGTTTGCTCACGCTATTTCTTCTGCGGCTTTTGATAATTCTTGGGCTTAG 492 0.5833 MSKKQAVNLDEEQIAELREIFRSFDRNNDGSLTQLELSSLLRSLGLKPSAEQVEGFIQKADTNSNGLIEFSEFVAVVAPELLPARSPYTEEQLRQLFRVFDRDGNGFITAAELAHSMAKLGHALTAEELTGMIKEADADGDGMISFQEFAHAISSAAFDNSWA* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2790 163 Gene3D - 1 81 - -
Lja4g2790 163 Gene3D - 82 161 - -
Lja4g2790 163 ProSiteProfiles EF-hand calcium-binding domain profile. 12 47 IPR002048 GO:0005509
Lja4g2790 163 CDD EFh 92 154 IPR002048 GO:0005509
Lja4g2790 163 Pfam EF-hand domain pair 90 153 IPR002048 GO:0005509
Lja4g2790 163 Pfam EF-hand domain pair 16 76 IPR002048 GO:0005509
Lja4g2790 163 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Lja4g2790 163 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Lja4g2790 163 SMART efh_1 16 44 IPR002048 GO:0005509
Lja4g2790 163 SMART efh_1 128 156 IPR002048 GO:0005509
Lja4g2790 163 SMART efh_1 52 80 IPR002048 GO:0005509
Lja4g2790 163 SMART efh_1 92 120 IPR002048 GO:0005509
Lja4g2790 163 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Lja4g2790 163 ProSitePatterns EF-hand calcium-binding domain. 25 37 IPR018247 -
Lja4g2790 163 SUPERFAMILY EF-hand 5 155 IPR011992 -
Lja4g2790 163 PANTHER CALCIUM-BINDING PROTEIN CML18-RELATED 6 163 - -
Lja4g2790 163 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Lja4g2790 163 ProSitePatterns EF-hand calcium-binding domain. 61 73 IPR018247 -
Lja4g2790 163 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Lja4g2790 163 PANTHER CALCIUM BINDING PROTEIN 6 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2790 Lja-Chr4 46081818 46082715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2790 1 163 EF-hand Containing Proteins AT1G32250 75.904 6.65e-87 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2790 K13448 - gmx:100820547 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2790 4 46081818 46082715 Lja4g2790 4 46081818 46082715 ECH