Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0282 Acco06g2450 . Accr5g00676 . Adu03g04192 . . . . . . . . . Alju03g0911 . . . . . Arst3g05545 . Bach11g00701 . Bisa07g0561 . Bva08g00056 . . . . . . . . . . . Glsi11g2685 . . . . . . . . . . . . . . . . . . . . . Lapu3g02847 . . . . . . . . . . . . . . . . . . . Mibi06g0700 . . . . . Phco4g02389 . Prci3g0667 . . . Pste3g03280 . Pte2g00689 . . . Pumo6g01610 . Pvu2g2145 . Rops2g01760 . . . Spst3g00360 . . . . . . . . . . . Vian1g02984 . Vifa1g10770 . Vimu11g01282 . Viun3g01757 . . . . .
Vvi2g0283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0287 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0288 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g3781 . . . . . . . Mtr4g3507 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g3881 . . . Tsu04g02269 . . . . . . . . . . . .
Vvi2g0289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0290 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0291 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Bva Bva08g00056 Chr08 306319 311038 -
Vvi Vvi2g0282 Chr2 2313285 2315269 +
Acco Acco06g2450 Chr06 21300230 21307813 -
Accr Accr5g00676 Chr5 30116991 30124709 +
Adu Adu03g04192 Chr03 130999451 131005479 -
Alju Alju03g0911 Chr03 36048127 36060925 +
Arst Arst3g05545 Chr3 129763576 129769557 -
Bach Bach11g00701 Chr11 5323354 5329938 +
Bisa Bisa07g0561 Chr07 13970246 13983965 +
Bva Bva08g00056 Chr08 306319 311038 -
Glsi Glsi11g2685 Chr11 19915007 19934893 -
Lapu Lapu3g02847 Chr3 51339499 51347645 +
Mibi Mibi06g0700 Chr06 24763766 24772044 +
Phco Phco4g02389 Chr4 45007942 45015578 +
Prci Prci3g0667 Chr3 8442079 8452547 +
Pste Pste3g03280 Chr3 25384466 25393952 +
Pte Pte2g00689 Chr2 5462803 5474212 -
Pumo Pumo6g01610 Chr6 23450321 23458894 +
Pvu Pvu2g2145 Chr2 36870748 36879974 +
Rops Rops2g01760 Chr2 27054806 27061347 +
Spst Spst3g00360 Chr3 6352512 6358949 +
Vian Vian1g02984 Chr1 48990731 49010394 +
Vifa Vifa1g10770 Chr1 1811697833 1811704275 -
Vimu Vimu11g01282 Chr11 14147812 14158880 -
Viun Viun3g01757 Chr3 12842760 12851136 -
Vvi Vvi2g0283 Chr2 2321151 2322473 +
Vvi Vvi2g0284 Chr2 2327108 2327833 +
Vvi Vvi2g0285 Chr2 2331495 2332154 +
Vvi Vvi2g0286 Chr2 2335462 2337426 -
Vvi Vvi2g0287 Chr2 2339995 2340957 +
Vvi Vvi2g0288 Chr2 2347356 2348758 -
Mal Mal5g3781 Chr5 106278075 106280073 +
Mtr Mtr4g3507 Chr4 48764915 48767183 +
Tpr Tpr4g3881 Chr4 44977184 44980040 -
Tsu Tsu04g02269 Chr04 25319977 25324769 +
Vvi Vvi2g0289 Chr2 2356887 2357477 -
Vvi Vvi2g0290 Chr2 2360011 2360508 -
Vvi Vvi2g0291 Chr2 2369010 2370772 +