Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0282 ATGGGGTTGAAAATGGCTTCTGCTACTAAGTATTCTATGGTGATGCAGATTCTGAGCTTAATCCTTTGTTTACTTACCTTGTCTTGCTCAGCCTTCACTTCTAAAGACTATGCTGATGCCCTTGCAAAGTCCATTCTGTTTTATGAGGGACAGCGGTCGGGGAAGTTGCCATCGAGCCAGCGCCTCACATGGAGAGGCGATTCTGGGTTGTCGGATGGATCATCTTATCATGTGGACCTGGTTGGAGGATACTATGATGCTGGAGATAATGTGAAGTTTGGCCTGCCGATGGCTTTCACCACTACACTGTTGGCATGGAGTGTTATTGAGTTTGGAAACTCAATGCCGAGCCAGATTGGGAATGCCAGAGCTGCCATTCGGTGGAGCACGGATTATCTTCTGAAAGCAGCCACCGCCACTCCTGGCACGTTATATGTCCAAGTGGGAGATCCAAACATGGACCATAAGTGCTGGGAGAGGCCTGAAGACATGGACACACCGCGCAATGTCTACAAGGTGTCTAAACAAAACCCAGGATCAGACGTAGCAGCTGAGACAGCAGCGGCATTGGCTGCAGCTTCAATTGTTTTTAAGGACTCTGACCCTTCTTACTCCACAAAGCTGCTGCAAACCGCCATGAAAGTGTTTGATTTCGCAGATAGCTACAGAGGGTCTTACAGCGACTCTCTCAGCTCGGTGGTCTGCCCATTCTACTGCTCCTACTCTGGATATCATGATGAGCTTCTCTGGGGGGCATCATGGATTCACAGGGCGTCAAATAACGCCTCATATCTGGCTTACATCCAGTCAAATGGCCAAACAATGGGCGCGGACGATGATGACTACTCCTTCAGTTGGGACGACAAGCGAGCTGGAACAAAGGTCCTTCTTTCCAAGGACTTCTTGGAGAAAAACACCGAGGAATTTCAGCTGTATAAACGACATTCAGACAACTATATATGCTCTCTGATTCCAGGAACATCCAGCTTTCAGGCCCAATACACTCCAGGTGGGCTTTTCTACAAAGGGAGCGAGAGCAATCTGCAATATGTGACTTCCACAGCATTCCTCCTCTTAACATACGCCAAGTATCTAAGCTCAAATGGAGGATCCGCCTCATGTGGGACTTCAACTGTCACAGCAGAACGGCTCATCTCACTGGCTAAGAAGCAGGTTGACTACATTTTAGGTGATAATCCAGCAAAGATGTCCTACATGGTGGGGTTCGGGGACAAGTACCCACAGCATGTCCACCACAGGGGTTCATCTCTACCGTCCGTGCGTACACACCCAGATCACATCGCCTGCAGCAATGGCTTCCAATACCTCTACTCTGCATCACCTAATCCAAACGTCCTTGTTGGAGCCATACTGGGTGGTCCCAATAACAGAGACAGCTTCGCTGACGATCGGAATAACTACCAGCAATCTGAGCCAGCAACATATATCAATGCACCATTTGTTGGTGCCCTTGCATTCTTCTCAGCAAATTAA 1494 0.4866 MGLKMASATKYSMVMQILSLILCLLTLSCSAFTSKDYADALAKSILFYEGQRSGKLPSSQRLTWRGDSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGNSMPSQIGNARAAIRWSTDYLLKAATATPGTLYVQVGDPNMDHKCWERPEDMDTPRNVYKVSKQNPGSDVAAETAAALAAASIVFKDSDPSYSTKLLQTAMKVFDFADSYRGSYSDSLSSVVCPFYCSYSGYHDELLWGASWIHRASNNASYLAYIQSNGQTMGADDDDYSFSWDDKRAGTKVLLSKDFLEKNTEEFQLYKRHSDNYICSLIPGTSSFQAQYTPGGLFYKGSESNLQYVTSTAFLLLTYAKYLSSNGGSASCGTSTVTAERLISLAKKQVDYILGDNPAKMSYMVGFGDKYPQHVHHRGSSLPSVRTHPDHIACSNGFQYLYSASPNPNVLVGAILGGPNNRDSFADDRNNYQQSEPATYINAPFVGALAFFSAN* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0282 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 467 485 IPR033126 -
Vvi2g0282 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 394 420 IPR018221 -
Vvi2g0282 497 SUPERFAMILY Six-hairpin glycosidases 34 496 IPR008928 GO:0005975
Vvi2g0282 497 Pfam Glycosyl hydrolase family 9 37 491 IPR001701 GO:0004553|GO:0005975
Vvi2g0282 497 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Vvi2g0282 497 Gene3D - 32 497 IPR012341 GO:0005975
Vvi2g0282 497 FunFam Endoglucanase 33 497 - -
Vvi2g0282 497 PANTHER ENDO-1,4-BETA-GLUCANASE 18 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0282 Vvi-Chr2 2313285 2315269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0282 36 495 Glycoside Hydrolase AT1G02800 66.522 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0282 - - vvi:100232903 981.474