Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0942 . . . . . . . . . Amo16g3289 Amo06g2340 . . . . . Car03g01763 . . . . . . . . . . . . . . . . Lasa3g02245 . . . . . Mal3g3041 Mepo3g02416 Mesa25g01790 . Mtr7g2245 . Phco2g01013 . Psa3g2211 . . . . Spst1g00311 . . . Trre13g02089 Tsu07g02809 . . . . Vivi6g03256 .
Pvu1g0943 . . . . . . . . . Amo16g3285 . . . . . . Car03g01762 . . . . . . . . . . . . . . . . Lasa3g02244 . . . . . Mal3g3040 . Mesa25g01792 . Mtr7g2244 . Phco2g01015 . Psa3g2213 . . . . Spst1g00312 . . . Trre13g02090 Tsu07g02806 . . . . Vivi6g03251 .
Pvu1g0944 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g01017 . Psa3g2216 . . . . Spst1g00313 . . . . . . . . . . .
Pvu1g0945 . . . . . . . . . . . Apr4g1607 . . . . Car03g00586 Cca07g00808 . . . . . Gma16g00492 . Gso16g0448 . . . . . . . . . . . . . . Mepo3g00720 Mesa25g03957 . Mtr7g0655 . Phco2g01025 . . Pste5g00383 Pumo5g02231 . . . . . . Trre13g00626 . Vian2g01525 . . . . .
Pvu1g0946 Acco02g0746 Accr2g02961 Adu06g02339 Aed9g1184 Aev06g1968 Ahy16g2454 Ahy6g2105 Aip06g02785 Alju01g0743 Amo16g3246 Amo06g2648 . Arst6g03017 Bach8g01434 . Bva04g01858 . . Dere01g1994 Dod01g1792 Enph2g0583 Glsi02g0074 . . Gso19g0814 . . . Lal10g0155 Lan10g1097 . Lan3g1639 Lapu1g00560 . . . . . Lja1g1752 . . . Mibi02g0660 . . Phco2g01026 Prci1g3743 . . . . . . Ssu4g1914 Sto8g1687 Tpr6g2795 . Tsu04g00559 . . Vimu6g03595 . Vivi3g02190 .
Pvu1g0947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0948 . . . Aed9g1372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vivi6g01023 .
Pvu1g0949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0950 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0941 Chr1 17026808 17029665 -
Pvu Pvu1g0942 Chr1 17042992 17045529 +
Amo Amo16g3289 Chr16 139344963 139348018 -
Amo Amo06g2340 Chr06 83405303 83408312 +
Car Car03g01763 Chr03 63499852 63502685 -
Lasa Lasa3g02245 Chr3 538789190 538791154 -
Mal Mal3g3041 Chr3 105397529 105400044 -
Mepo Mepo3g02416 Chr3 34131812 34134375 -
Mesa Mesa25g01790 Chr25 21678461 21680729 +
Mtr Mtr7g2245 Chr7 38843844 38846457 -
Phco Phco2g01013 Chr2 13593747 13598553 +
Psa Psa3g2211 Chr3 192807267 192810358 +
Spst Spst1g00311 Chr1 4308450 4310425 +
Trre Trre13g02089 Chr13 18250099 18252322 +
Tsu Tsu07g02809 Chr07 33080588 33083026 -
Vivi Vivi6g03256 Chr6 122972586 122974931 -
Pvu Pvu1g0943 Chr1 17340495 17342191 +
Amo Amo16g3285 Chr16 139102614 139104134 -
Car Car03g01762 Chr03 63485625 63487073 -
Lasa Lasa3g02244 Chr3 538729052 538729877 -
Mal Mal3g3040 Chr3 105388774 105389913 -
Mesa Mesa25g01792 Chr25 21692532 21693519 +
Mtr Mtr7g2244 Chr7 38834050 38835443 -
Phco Phco2g01015 Chr2 13763969 13765309 +
Psa Psa3g2213 Chr3 192890641 192892025 +
Spst Spst1g00312 Chr1 4334463 4335843 +
Trre Trre13g02090 Chr13 18258672 18259880 +
Tsu Tsu07g02806 Chr07 33003162 33004934 +
Vivi Vivi6g03251 Chr6 122936990 122937975 -
Pvu Pvu1g0944 Chr1 17404834 17406215 +
Phco Phco2g01017 Chr2 13878288 13879702 +
Psa Psa3g2216 Chr3 193037348 193039189 +
Spst Spst1g00313 Chr1 4350801 4351214 +
Pvu Pvu1g0945 Chr1 17530158 17533663 +
Apr Apr4g1607 Chr4 18337513 18340768 -
Car Car03g00586 Chr03 27851264 27855968 +
Cca Cca07g00808 Chr07 13459718 13464407 -
Gma Gma16g00492 Chr16 5443485 5447491 -
Gso Gso16g0448 Chr16 5311495 5315519 -
Mepo Mepo3g00720 Chr3 10061538 10070725 -
Mesa Mesa25g03957 Chr25 68924166 68929024 +
Mtr Mtr7g0655 Chr7 10186376 10190231 -
Phco Phco2g01025 Chr2 14462267 14466483 +
Pste Pste5g00383 Chr5 2534866 2539245 +
Pumo Pumo5g02231 Chr5 59811158 59814193 -
Trre Trre13g00626 Chr13 4875360 4878889 -
Vian Vian2g01525 Chr2 31600089 31602215 -
Pvu Pvu1g0946 Chr1 17550740 17554392 -
Acco Acco02g0746 Chr02 5226968 5228725 -
Accr Accr2g02961 Chr2 65507625 65509406 +
Adu Adu06g02339 Chr06 96347239 96350456 +
Aed Aed9g1184 Chr9 9068585 9072945 +
Aev Aev06g1968 Chr06 16984503 16986387 +
Ahy Ahy16g2454 Chr16 133169529 133172518 +
Ahy Ahy6g2105 Chr6 101860260 101863465 +
Aip Aip06g02785 Chr06 119443099 119446038 +
Alju Alju01g0743 Chr01 5529348 5531131 -
Amo Amo16g3246 Chr16 137693636 137696659 -
Amo Amo06g2648 Chr06 90136848 90140025 +
Arst Arst6g03017 Chr6 95544968 95547542 +
Bach Bach8g01434 Chr8 9878741 9880577 +
Bva Bva04g01858 Chr04 19135268 19137794 -
Dere Dere01g1994 Chr01 34037122 34038928 -
Dod Dod01g1792 Chr01 51968152 51971421 -
Enph Enph2g0583 Chr2 4475056 4479256 -
Glsi Glsi02g0074 Chr02 523011 527379 +
Gso Gso19g0814 Chr19 33187194 33190704 -
Lal Lal10g0155 Chr10 1803280 1806062 -
Lan Lan10g1097 Chr10 16156693 16159035 -
Lan Lan3g1639 Chr3 28400952 28403502 -
Lapu Lapu1g00560 Chr1 17791019 17795073 +
Lja Lja1g1752 Chr1 19656749 19659733 +
Mibi Mibi02g0660 Chr02 6420790 6422535 -
Phco Phco2g01026 Chr2 14477248 14479786 -
Prci Prci1g3743 Chr1 53762302 53765227 +
Ssu Ssu4g1914 Chr4 35966591 35969555 +
Sto Sto8g1687 Chr8 10819915 10821514 +
Tpr Tpr6g2795 Chr6 30398861 30403041 -
Tsu Tsu04g00559 Chr04 5226398 5230592 +
Vimu Vimu6g03595 Chr6 33440471 33442970 -
Vivi Vivi3g02190 Chr3 36100666 36103021 +
Pvu Pvu1g0947 Chr1 17621717 17622650 +
Pvu Pvu1g0948 Chr1 18309755 18317214 -
Aed Aed9g1372 Chr9 13451035 13452579 -
Vivi Vivi6g01023 Chr6 32585358 32608794 -
Pvu Pvu1g0949 Chr1 18335341 18335914 +
Pvu Pvu1g0950 Chr1 18426176 18426538 +