Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2340 ATGGCTCTCAAGGCCGTTCACGTCTCCGACGTCCCTTCCCTCGATCACGTCACAGAGAATGCCTCTTTGACCGCCTACGCCACCCGCTTCTCCAACGTGGAGATGAATCGGAGTGAGTTGAAGATGCCGAAGTTTGTGGTGGTAGGGCACAGGGGACACGGCATGAACCAGTTGCAGTCGTCGGATCGGAGAATGAGAGCCATCAAGGAGAACTCAATCATGTCCTTCAACGCCGCTGCTGCTTTCCCTCTCGATTTCATCGAATTCGACGTTCAGGTGACAAAAGATGACTACCCGGTCATTTTCCACGACGACTTCATCTTCTCCGAAGAGAACGGTAATGTGTTTCAGACGAGAATGACGGATCTAACCCTCTCTGAGTTCCTTTCGTACGGTCCTCAGAGAGAGGCTGGAAAGGAAGGGAAAAAGTTGCTGAGGAAAACAAAGGAGGGTAATATACTCAAGTGGGACGTTGAAAAGGATGACCCACTCTGCACTCTCGAGGAAGCTTTTGTCAACGTTGAACCCTCTATAGGTTTCAACGTTGAGCTTAAGTTCGATGACCACATTGTTTACCAGCAAGATCATCTTGTCCATGTTCTTCAGGCTGTCTTGAAGATTGTGTTTGAATATGCCAAGGACAGGCCTATCATATTCTCTACTTTTCAGCCAGATGCTGCAATACTTGTTCGTAAATTGCAAAGCACCTACCCTGTATTCTTCTTGACTAACGGAGGATGTGAAATCTATGAGGATGTGAGAAGGAATTCTTTAGAGGAGGCCCTGAAGCTCTGCTTGGAGAATGATTTGCAAGGAATTGTCTCTGAGATCAAAGGAGTTTTCAGGAACCCCGGAGTTGTAAGCAAGATCAAGGAGTCCTCGCTTTGCCTTCTTACTTACGGAAAACTAAACAATGTTCCTGAGGCAGTGTACATGCAACATCTTATGGGAATTGATGGGGTGATTGTTGATCTGGTGAAAGAAATAACAGAGGCCGTTGCGAATATGATAAAGCCAGTGAGCAACAATGCGGTGGGTGGCGAAGAGGGCTTGGCTGAAATAGAAGGGATGGGGAAGTTGCAGGTGAAGTCAAATCCTAAATTCTCGCAGGAGGAAATGTCTTTTCTCTTCAAGCTGATTCCACAGTTGTTGCAGATTTGA 1161 0.4686 MALKAVHVSDVPSLDHVTENASLTAYATRFSNVEMNRSELKMPKFVVVGHRGHGMNQLQSSDRRMRAIKENSIMSFNAAAAFPLDFIEFDVQVTKDDYPVIFHDDFIFSEENGNVFQTRMTDLTLSEFLSYGPQREAGKEGKKLLRKTKEGNILKWDVEKDDPLCTLEEAFVNVEPSIGFNVELKFDDHIVYQQDHLVHVLQAVLKIVFEYAKDRPIIFSTFQPDAAILVRKLQSTYPVFFLTNGGCEIYEDVRRNSLEEALKLCLENDLQGIVSEIKGVFRNPGVVSKIKESSLCLLTYGKLNNVPEAVYMQHLMGIDGVIVDLVKEITEAVANMIKPVSNNAVGGEEGLAEIEGMGKLQVKSNPKFSQEEMSFLFKLIPQLLQI* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2340 386 Pfam Glycerophosphoryl diester phosphodiesterase family 50 326 IPR030395 GO:0006629|GO:0008081
Amo06g2340 386 SUPERFAMILY PLC-like phosphodiesterases 43 327 IPR017946 GO:0006629|GO:0008081
Amo06g2340 386 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 1 371 - -
Amo06g2340 386 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD3 1 371 - -
Amo06g2340 386 ProSiteProfiles GP-PDE domain profile. 45 333 IPR030395 GO:0006629|GO:0008081
Amo06g2340 386 Gene3D Phosphatidylinositol (PI) phosphodiesterase 32 334 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2340 Amo-Chr6 83405303 83408312 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2340 K18696 - gmx:100781085 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3289 16 139344963 139348018 Amo06g2340 06 83405303 83408312 hybridization