Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2117 ATGGAAGAATCAAGGAAGAAAGGGACTGTGACCTCACTCGCGTCCTTGTTCCCCGTCGAGGAGGCGCAGAAGGCGGCGAAGCGCGTCGAAGACGCCATTGCCGACAATCAGAACGAGCTCGACCGCGTACGAGGTTTCATCACCGACAACAACAACCTCATCAACCTCGTCCACAAGCTCCCCGAACAACTCTCCCACGACGTCATGGTTCCGTTTGGGAAAGCAGCGTTCTTCCCCGGTCGTTTGATTCACACCAACGAGTTCCTGGTTCTTTTGGGAGAAGGGTATTATGCAGAGCGAACGTCAAAGCAAACCGTTGAGATTTTACAACGGAGAGGGCAGTCCTTGGATTTGCAGGTTGATTCTCTCGAGGCCAACATCAAGGACCTCGAAGCAGAGGCTTCGTTTTTCAATGCCACGGCTTCTCAAGTAGCGGAGGGTCTTGTGGAGATAAGGGAAGATTATGTGGAGAAAGACTCTAACGAAGGGGAATCTAAATCAGGTCCACAGCAGCAAGATGCTCCTAATACGCGTAATGCTACAGCTGATGATGGGGAATATGCTCGCATGCTGGCAATAATGGATGAACTTGAGAAAGAAGAGCTTGCTGCAGAAAGTGGCAATCACAGTGATCAAAATGATGTAAATACTGCTGATTTTGATGAGATATCATATCAGGAACATATTGATAACAATctccaaaattcaaaaGATTTTCATCAAAGTGTACTACTAGACCAGGctaataatgatattatagCAACTGAGTTTCCAAAAGAGCACGATCATAAAGAAGATATAACTGATCAGTTGAATTTTGCTAGCCTGGCCGTGCAATCTAGGGTCAGAGAGAGGGAAAATCTTGCACAGTATGGAGAATCCATTGATCCTAGTAAAAAGATTCCTGTTCTTTCTAAAGAAAAGACAGTTCAAGCAACTACTGCATCAAAAACTGAGGTTCGACACCAAACTTCACAACCATCATTTGACAGTCACAAGGCTTTTACAGGCTCCATTATAGAGCATGCTGAGAATATACAAACAACTTCAAGAGAACAAAGTTCAGCTACATCACAGGGTTCTAGTTCTCATTCAAAACCAGTCTCCAGATTCAAAATGCAAAGAAGATAG 1131 0.4385 MEESRKKGTVTSLASLFPVEEAQKAAKRVEDAIADNQNELDRVRGFITDNNNLINLVHKLPEQLSHDVMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQTVEILQRRGQSLDLQVDSLEANIKDLEAEASFFNATASQVAEGLVEIREDYVEKDSNEGESKSGPQQQDAPNTRNATADDGEYARMLAIMDELEKEELAAESGNHSDQNDVNTADFDEISYQEHIDNNLQNSKDFHQSVLLDQANNDIIATEFPKEHDHKEDITDQLNFASLAVQSRVRERENLAQYGESIDPSKKIPVLSKEKTVQATTASKTEVRHQTSQPSFDSHKAFTGSIIEHAENIQTTSREQSSATSQGSSSHSKPVSRFKMQRR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2117 376 MobiDBLite consensus disorder prediction 165 179 - -
Ssu3g2117 376 MobiDBLite consensus disorder prediction 300 376 - -
Ssu3g2117 376 MobiDBLite consensus disorder prediction 157 184 - -
Ssu3g2117 376 Pfam Prefoldin subunit 30 145 IPR004127 -
Ssu3g2117 376 PANTHER RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 1 376 - -
Ssu3g2117 376 Coils Coil 106 140 - -
Ssu3g2117 376 Gene3D - 19 151 IPR009053 -
Ssu3g2117 376 Coils Coil 19 39 - -
Ssu3g2117 376 MobiDBLite consensus disorder prediction 341 368 - -
Ssu3g2117 376 MobiDBLite consensus disorder prediction 307 333 - -
Ssu3g2117 376 CDD Prefoldin_alpha 37 145 - -
Ssu3g2117 376 SUPERFAMILY Prefoldin 20 139 - -
Ssu3g2117 376 TIGRFAM TIGR00293: prefoldin, alpha subunit 24 144 IPR004127 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2117 K17560 - gmx:100781544 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2117 3 69492717 69498314 Ssu3g2117 3 69492717 69498314 ECH