Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01568 ATGGAATTCACGCCTGCTTCATGCGATGTGCTCATCAACTTTACCGGAGAAGACATCCGTAGGAAGTTCGTTTCTCATCTCGATTCGGCCCTCTCAGCTGCTGGGCTCACCACTTTCCTTCAGGAGGAGAATCTAGTCAAAACCATGCACATCCAAGAACAACTAACGCAGGCAAAAGAAATGTGTCGCGTAGCAATAGTTGTTTTCACCAAAACCTACGCTGAATCTGCTTGGTGTCTTCATGAGCTTCAACAAATCATCAAATGGCCTGAAACTTATTTCCGACATGTTCTGCCTGTATATTACGAAATTCAGCCATCAGATGTACGTCTTCAGACGAATGATTTTGGAAAAGCCTTGAAAGCAACTGCACAACAAACGTTTTCAGGACAAGAAGTGGAAGATGCCTTGTCCAGGTGGAGCCGCGCACTCACCAAAGCAGCAAATTTCTTTGGGTGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTATTAAGAGCGTTCTTAATTTACCAGTCTTGTCTGCTACTCAATTTCCAATTGGATTACAATCCCATGTGCAAATACTGATACAATATATTGAAAATACCAAAGGCACTTGTATCTTAGGGATATGGGGAAGTAGAGGAGTGGGTAAAGCCACCGTTGCTAAAGCCGTCTACAACCAAATTCATGACATTCTTAATGGTTGTGGACTACATGCTGATATTGGAATACAAGTTCTCATAAAGCGTAGCCTACTGAAAATTGGGAAGAACAATAAACTCGGCATGCATCATTTGCTACAAGAGATGGGAAGAGAGATTATTCATAGAAGTTCAACCAAGGAACGTGAGAAGCGCAACCGACTGTTTGCTGGCGATGCAAAATTTGTACTAACAAAGAATAATGGAACAGAAGCCATTCAGGGATTGGTTCTGAAGTCATCACCATTACCCATCACATCTTGGTTGGAAATTTCTGCTTTCCAGAATAAGCAGATATTGAGACTGTCAGACTTGGACTCTCTACTATTCACTAGAGACTATCCGAACCTCTCTAAGCAACTGCGATGGATCTGTCATCGAGAGTTTCCTTTCAAACATATACCTGAAAACTGTGATATGGAAGGTGTAATTGCGATTGATTTGAAATGCAGTAATCTTCAACGAGTCTGGAAAGAACCATGGCTCATTCTCAAAGATTGTCCAAGATTGTGCAAGGTACACCAATCCATAGGAGATCTCTGCAATCTTCTACTGATAAATTTGAAGGACTGTATAAGTCTTAGCAATCTCCCCAAAGAGGTATATAAGCTGAAGTCTTTAAAAACTCTCATCCTGTCTGGTTGTGCCAAGATTGACATTTTGGAAGAAGATTTAGTGCAGATGGAATCCTTGATAACACTAATTGCTGAATATAAAGCAGTGAAACAAGTGCCCTTTTCAATTGGATTGGCAAGGAGTGAATCTTCTGATGTTTGTCTTCCAGGTGACAACCATCCTCATTGGTTGGCCCATGTGGGTGAGGGACATTCAGTTCATTTCACTGTGCCTAAGGACTGTGACTTGATGGGAATGGTTTTGTGTGTTGTTTATTTATCAACCCCTGAGAACATGGCAACTGAATGTCTTACAAGTGTCTTAATTGTGAACTACACGAAGTGCACATTCCAGATACACAAGCATGGCACAGTAATTTCCTTTGATAACACAGATTGGGAGGGCATAATATCAAATTTAGGATCTGGAGACAATGTGGAGATTTTTGTGACTCTTGCTCATGGATTCGTGGTCAAGAACACAGCTGTCTATATGACATATGGTGAATCAAAGAAAAATGCCCTCCATAAATTCATAAAAAGAAGTGTAATGTGTGACTTCAAGTAA 1881 0.4094 MEFTPASCDVLINFTGEDIRRKFVSHLDSALSAAGLTTFLQEENLVKTMHIQEQLTQAKEMCRVAIVVFTKTYAESAWCLHELQQIIKWPETYFRHVLPVYYEIQPSDVRLQTNDFGKALKATAQQTFSGQEVEDALSRWSRALTKAANFFGWDESNYRSDAELVDKIIKSVLNLPVLSATQFPIGLQSHVQILIQYIENTKGTCILGIWGSRGVGKATVAKAVYNQIHDILNGCGLHADIGIQVLIKRSLLKIGKNNKLGMHHLLQEMGREIIHRSSTKEREKRNRLFAGDAKFVLTKNNGTEAIQGLVLKSSPLPITSWLEISAFQNKQILRLSDLDSLLFTRDYPNLSKQLRWICHREFPFKHIPENCDMEGVIAIDLKCSNLQRVWKEPWLILKDCPRLCKVHQSIGDLCNLLLINLKDCISLSNLPKEVYKLKSLKTLILSGCAKIDILEEDLVQMESLITLIAEYKAVKQVPFSIGLARSESSDVCLPGDNHPHWLAHVGEGHSVHFTVPKDCDLMGMVLCVVYLSTPENMATECLTSVLIVNYTKCTFQIHKHGTVISFDNTDWEGIISNLGSGDNVEIFVTLAHGFVVKNTAVYMTYGESKKNALHKFIKRSVMCDFK 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01568 626 Gene3D - 6 171 IPR035897 -
Spst4g01568 626 Pfam TIR domain 10 173 IPR000157 GO:0007165
Spst4g01568 626 Gene3D Ribonuclease Inhibitor 295 487 IPR032675 -
Spst4g01568 626 PRINTS Disease resistance protein signature 435 451 - -
Spst4g01568 626 PRINTS Disease resistance protein signature 206 221 - -
Spst4g01568 626 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 234 465 IPR044974 GO:0006952
Spst4g01568 626 SMART till_3 7 150 IPR000157 GO:0007165
Spst4g01568 626 SUPERFAMILY L domain-like 316 479 - -
Spst4g01568 626 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 153 IPR035897 -
Spst4g01568 626 Gene3D - 172 294 IPR027417 -
Spst4g01568 626 ProSiteProfiles TIR domain profile. 6 176 IPR000157 GO:0007165
Spst4g01568 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 251 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01568 Spst-Chr4 54781975 54788170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01568 10 172 Miscellaneous Gene Families AT1G57670 32.727 1.49e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01568 - - vra:106773334 332.798