Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1108 ATGGATAACGCCTCCTCATCATACAAACTATCACGGAAGTACGATGTGCTCATCAACTTCACTGGAGAAGATATCCACAGAAAATTTGTTTCTCATCTCAATTCTGCCCTCTCTACGGTTGATCTCACCACTTTCCTTCATCACCCCAGTGCAGTGACGTCAACTCAAATCCAAGAACCTGTTCTCAGTCACTGTCGTGTAGTAATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTCAACGAATCATCAACTGGCACGAAACTTATAGCCGACATGTTCTGCCTGTATATTATGAAATCCAGCCATCTGATGTACGGCTTCAGATGGGTGACTTTGGAAAAGCCTTGGAGGCAACTGCACAACAAACATTTTCAGGACAAGAACTGGAGCATGGCATGTCCAGGTGGAGGCATGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGAGCTTATGTCACGAAGATCCTAAATGGTTGTGGGGTAGATGTTGATATTGCAATAAGAGTTCTCATGGAGCGTAACCTCATCAAAATTAACAAGAACAACAAATTTGGAATGCATCCTTTGCTACAAAAAATCGGAAGAGAAATTGTTATTGAAAATTCAGGAAAGGATCTTGGGAAGAACAGGCTATTGTGGTTTCATAAGGATAAAATATATGGGACAGGAGCCATGCAGTGGTTGCCTTTTACTGACAACGTAGGTGGTGTAAATTTTGAGTACCTTCTTAAGAAAATAAAATGGATCAGTTGGCATGGGCTTTCTTCAGAGCATGATCCAATAGCTATTGATTCAAAACGCAGTCTTCTTCGATTTCTCAGGAAAAGACCCCAGGTTATGACATCGCTAAAAGTCCTTAACCTCAGTCACTCCAAGCATTTAACTACAACCCCTGACTTTACCGGATTACCAAGTCTTGAATACCTCATTTTGAAATATTGTTCGAGATTGAGCAAAGTACACCAATCTATTGGATCACTCAACAGTCTTATACTGCTAAATTTGAAAGACTGTACAAGTCTAAACAATCTTCCAACAGAGATATATGAGTTGAAATCTTTAAGAACCTTCATTCTCTCTGGTTGTTCCAAGATTCACATAATGGATAAAGATATAGCAAAGTTGGGATCCTTGATAACTCTAATTGCTGAAAACAAAGCTGTGAAAGAAGTGCCTTTTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCTCTACCTGGATTTGAGGGATTATCTCATAATCTTTTTCCTTCTATCATTCGGTCTTGGATGTCCCCAATAATGAATCCCTTCTCTTGTATTCATTCGTTTTGCATGGATACGAAGGATTATACGATTGATATTGCACCGTTTCTTAGTACCCTTGCAAATATTCCAAATGTTTTGGTAGCATGTGACACCGATTTTCAATTATCTAAGCAAGTGAAAAATATTTTGGAAGAATACTTTCCGAGTATTACGGAATCAGGAATTTCAAAGCAGCACTTTAGATGTTCTTTGATTGGTGTTGGAGCATACCATCAATTCTTCAATGCTGTCAGCGACAACATATATCAGGTATTAGCAAGCAGTGAGTCTGGTGATGTTTCTCTCCCAACTGTGAATGATCCTTATTGTTTGGCCCATATGGGTGATGGACACTCTGTTTCTTTCATTGTGCCTCAAGATCGTGACATGAAAGGAATGACTTTGTGTATTGTTTATTTATCAAACCTTGAAATCACGGAAAATGAATGTCTTAAAAGTGTCTTAATTGTTAATTACACAAAGTGTACATTCCAAATACACAACCGTGACACAGTCATTTGCTTTAATGATGATGATTCACATTGCATAATGTCAAATTTAGAATGTGGAGACAATGTGGAGATTTTTGTGAGTTTCGGTAATGGATTGGTAGTCAAGAACACAGCGGTGTATTTGATATGTCGTGAATCAAGGAACATGGAAAAAGCGTCTGAGCCAAAGAAACATTCTCTCATTAGATTCATAAAGAAAGTGGTAATGTGA 2052 0.3835 MDNASSSYKLSRKYDVLINFTGEDIHRKFVSHLNSALSTVDLTTFLHHPSAVTSTQIQEPVLSHCRVVIVVFTQTYSQSAWCLNQLQRIINWHETYSRHVLPVYYEIQPSDVRLQMGDFGKALEATAQQTFSGQELEHGMSRWRHALTKAANFFGWDESNHRAYVTKILNGCGVDVDIAIRVLMERNLIKINKNNKFGMHPLLQKIGREIVIENSGKDLGKNRLLWFHKDKIYGTGAMQWLPFTDNVGGVNFEYLLKKIKWISWHGLSSEHDPIAIDSKRSLLRFLRKRPQVMTSLKVLNLSHSKHLTTTPDFTGLPSLEYLILKYCSRLSKVHQSIGSLNSLILLNLKDCTSLNNLPTEIYELKSLRTFILSGCSKIHIMDKDIAKLGSLITLIAENKAVKEVPFSIVSSKSIGYISLPGFEGLSHNLFPSIIRSWMSPIMNPFSCIHSFCMDTKDYTIDIAPFLSTLANIPNVLVACDTDFQLSKQVKNILEEYFPSITESGISKQHFRCSLIGVGAYHQFFNAVSDNIYQVLASSESGDVSLPTVNDPYCLAHMGDGHSVSFIVPQDRDMKGMTLCIVYLSNLEITENECLKSVLIVNYTKCTFQIHNRDTVICFNDDDSHCIMSNLECGDNVEIFVSFGNGLVVKNTAVYLICRESRNMEKASEPKKHSLIRFIKKVVM* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1108 683 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Vra9g1108 683 Gene3D - 10 177 IPR035897 -
Vra9g1108 683 Gene3D Ribonuclease Inhibitor 255 414 IPR032675 -
Vra9g1108 683 ProSiteProfiles TIR domain profile. 12 173 IPR000157 GO:0007165
Vra9g1108 683 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 160 230 IPR044974 GO:0006952
Vra9g1108 683 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 251 657 IPR044974 GO:0006952
Vra9g1108 683 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 151 IPR044974 GO:0006952
Vra9g1108 683 Pfam TIR domain 13 168 IPR000157 GO:0007165
Vra9g1108 683 SUPERFAMILY L domain-like 293 422 - -
Vra9g1108 683 SMART till_3 13 153 IPR000157 GO:0007165
Vra9g1108 683 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 160 230 - -
Vra9g1108 683 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 151 - -
Vra9g1108 683 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 251 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1108 Vra-Chr9 14253376 14257074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1108 16 163 Miscellaneous Gene Families AT1G57830 29.530 1.65e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1108 - - vra:106772917 1369.76