Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0069 . . . . . Ahy12g1907 Ahy2g1652 . . . . . Arst2g02416 . . . Car06g02581 . . . . . Gma03g00672 . Gso1g0914 Gso3g0655 . . . . . . . . . . . . . . . . . Mtr4g0513 . Phco1g01461 . . Pste6g01264 . . . . . . Tpr4g0799 Trre7g00521 . . . . . . Vra9g0978
Pvu10g0070 . . . . . . . . . . . . . . . . Car06g02582 . . Dod07g1453 . . Gma03g00673 Gma01g01092 Gso1g0915 Gso3g0656 . . . . . . . . . . . . Lja3g3248 . Mepo2g00549 Mesa13g04951 . Mtr4g0514 . Phco1g01463 . . Pste6g01266 . . . . . . Tpr4g0800 Trre7g00523 Tsu06g00502 . . . . . .
Pvu10g0071 . . . . . . Ahy2g1644 . . . Amo02g2372 . . . . . . . . . . . . Gma01g01083 Gso1g0908 . . . . . . . . . . . . . . . . . . . . Phco1g01466 . . . . . . . . . . . . . . Vimu9g01170 . . Vra9g0976
Pvu10g0072 . . Adu02g01845 . . . Ahy2g1641 Aip02g02125 . . . . . . . . . . . Dod07g1448 . . . Gma01g01080 Gso1g0907 . . . . . . . . . . . . . Lja3g3243 . . . . . . Phco1g01467 . . . . . . . . . . . Tsu06g00494 . . Vimu9g01069 . . Vra9g0975
Pvu10g0073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu9g01071 . . .
Pvu10g0074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01470 . . . . . . . . . . . . . . . . . .
Pvu10g0075 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01473 . . . . . . . . . . . . . . Vimu9g01073 . . .
Pvu10g0076 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01474 . . . . . . . . . . . . . . Vimu9g01074 . . .
Pvu10g0077 Acco07g1942 Accr6g01665 . . . Ahy12g1913 . . Alju05g0249 Amo12g2177 . . Arst2g02417 . Bisa06g0306 . Car06g02583 . Dere11g0287 . Enph10g0836 Glsi07g1935 Gma03g00674 . Gso1g0916 Gso3g0657 Lal14g0240 . . . . . . Lasa7g00591 . . . . . . Mepo2g00550 . Mibi04g1924 Mtr4g0515 . . Prci12g0270 . Pste6g01269 . . . Spst4g01342 . Sto1g2325 Tpr4g0801 . Tsu06g00505 . . Vimu9g01076 . . .
Pvu10g0078 . . . Aed2g1298 . Ahy12g1918 . . . Amo12g2179 . . Arst2g02422 . . . Car06g02584 Cca01g01808 . . . . . . Gso1g0918 . . . . . . . . Lasa7g00443 . . . . . Mal7g0538 . . . Mtr4g0517 . Phco1g01476 . . Pste6g01282 . . Seca2g01679 Spst4g02912 . . Tpr4g0802 . Tsu06g00506 . . Vimu9g01079 . . .
   
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Select Species Gene Chromosome Start End Strand
Spst Spst4g02912 Chr4 68740380 68746160 +
Seca Seca2g01679 Chr2 30792222 30794157 -
Gso Gso1g0907 Chr1 36951109 36954094 +
Pvu Pvu10g0069 Chr10 1078947 1080874 -
Ahy Ahy12g1907 Chr12 100389081 100389505 -
Ahy Ahy2g1652 Chr2 86820200 86820632 -
Arst Arst2g02416 Chr2 78320713 78322187 -
Car Car06g02581 Chr06 30800798 30803053 -
Gma Gma03g00672 Chr03 21391696 21393803 -
Gso Gso1g0914 Chr1 37178546 37180716 -
Gso Gso3g0655 Chr3 19930487 19932632 -
Mtr Mtr4g0513 Chr4 6418249 6421242 -
Phco Phco1g01461 Chr1 50453718 50455629 -
Pste Pste6g01264 Chr6 5444417 5444650 -
Tpr Tpr4g0799 Chr4 7408490 7411214 -
Trre Trre7g00521 Chr7 3233325 3233558 -
Vra Vra9g0978 Chr9 11942217 11944620 +
Pvu Pvu10g0070 Chr10 1083790 1087293 +
Car Car06g02582 Chr06 30906365 30909355 +
Dod Dod07g1453 Chr07 39231395 39234650 +
Gma Gma03g00673 Chr03 21395157 21398082 +
Gma Gma01g01092 Chr01 38812302 38816116 +
Gso Gso1g0915 Chr1 37182206 37186404 +
Gso Gso3g0656 Chr3 19933854 19936903 +
Lja Lja3g3248 Chr3 63242757 63245148 +
Mepo Mepo2g00549 Chr2 6490640 6494253 +
Mesa Mesa13g04951 Chr13 79084973 79087929 -
Mtr Mtr4g0514 Chr4 6423413 6426705 +
Phco Phco1g01463 Chr1 50482748 50487163 +
Pste Pste6g01266 Chr6 5451279 5456062 +
Tpr Tpr4g0800 Chr4 7412440 7415253 +
Trre Trre7g00523 Chr7 3241018 3243539 +
Tsu Tsu06g00502 Chr06 4209460 4212746 +
Pvu Pvu10g0071 Chr10 1096234 1097676 +
Ahy Ahy2g1644 Chr2 86716803 86720042 -
Amo Amo02g2372 Chr02 76303276 76307183 -
Gma Gma01g01083 Chr01 38593800 38596902 +
Gso Gso1g0908 Chr1 36971087 36974098 +
Phco Phco1g01466 Chr1 50562062 50569514 +
Vimu Vimu9g01170 Chr9 19360757 19362187 -
Vra Vra9g0976 Chr9 11925046 11929866 -
Pvu Pvu10g0072 Chr10 1101698 1103203 +
Adu Adu02g01845 Chr02 78812037 78814779 -
Ahy Ahy2g1641 Chr2 86578018 86580883 -
Aip Aip02g02125 Chr02 91033198 91035978 -
Dod Dod07g1448 Chr07 39185768 39189000 -
Gma Gma01g01080 Chr01 38558020 38576295 +
Gso Gso1g0907 Chr1 36951109 36954094 +
Lja Lja3g3243 Chr3 63181490 63185079 -
Phco Phco1g01467 Chr1 50606093 50608220 +
Tsu Tsu06g00494 Chr06 4172417 4175252 -
Vimu Vimu9g01069 Chr9 17902428 17904769 +
Vra Vra9g0975 Chr9 11905739 11908441 -
Pvu Pvu10g0073 Chr10 1106918 1110938 +
Vimu Vimu9g01071 Chr9 17919181 17923435 -
Pvu Pvu10g0074 Chr10 1112648 1117251 -
Phco Phco1g01470 Chr1 50636835 50640508 +
Pvu Pvu10g0075 Chr10 1120357 1124738 -
Phco Phco1g01473 Chr1 50678590 50682003 -
Vimu Vimu9g01073 Chr9 17929524 17930673 -
Pvu Pvu10g0076 Chr10 1128996 1132735 -
Phco Phco1g01474 Chr1 50706283 50709734 -
Vimu Vimu9g01074 Chr9 17944211 17948269 -
Pvu Pvu10g0077 Chr10 1136150 1140869 -
Acco Acco07g1942 Chr07 36901955 36905665 -
Accr Accr6g01665 Chr6 51011136 51014834 -
Ahy Ahy12g1913 Chr12 100559467 100564495 -
Alju Alju05g0249 Chr05 3780690 3784380 +
Amo Amo12g2177 Chr12 100235200 100240355 -
Arst Arst2g02417 Chr2 78363197 78367715 -
Bisa Bisa06g0306 Chr06 7905358 7909026 +
Car Car06g02583 Chr06 30914933 30920378 -
Dere Dere11g0287 Chr11 5181153 5185116 +
Enph Enph10g0836 Chr10 10897305 10902035 +
Glsi Glsi07g1935 Chr07 62685414 62692151 -
Gma Gma03g00674 Chr03 21407758 21412803 -
Gso Gso1g0916 Chr1 37191096 37196832 -
Gso Gso3g0657 Chr3 19946295 19951910 -
Lal Lal14g0240 Chr14 2774153 2779443 -
Lasa Lasa7g00591 Chr7 24961414 24964065 +
Mepo Mepo2g00550 Chr2 6497971 6503156 -
Mibi Mibi04g1924 Chr04 49873669 49877490 -
Mtr Mtr4g0515 Chr4 6430703 6435804 -
Prci Prci12g0270 Chr12 2237172 2241541 +
Pste Pste6g01269 Chr6 5463650 5469975 -
Spst Spst4g01342 Chr4 50816635 50821211 -
Sto Sto1g2325 Chr1 31158610 31162256 +
Tpr Tpr4g0801 Chr4 7423258 7428599 -
Tsu Tsu06g00505 Chr06 4230009 4235261 -
Vimu Vimu9g01076 Chr9 17974142 17978865 -
Pvu Pvu10g0078 Chr10 1163012 1165275 -
Aed Aed2g1298 Chr2 12314170 12316081 +
Ahy Ahy12g1918 Chr12 100633261 100636014 -
Amo Amo12g2179 Chr12 100329470 100331209 -
Arst Arst2g02422 Chr2 78476958 78479536 -
Car Car06g02584 Chr06 30945029 30948213 -
Cca Cca01g01808 Chr01 42240137 42242830 +
Gso Gso1g0918 Chr1 37237086 37241071 -
Lasa Lasa7g00443 Chr7 14753459 14755109 -
Mal Mal7g0538 Chr7 14501064 14508683 +
Mtr Mtr4g0517 Chr4 6461067 6465794 -
Phco Phco1g01476 Chr1 50816699 50819133 -
Pste Pste6g01282 Chr6 5520872 5533535 -
Seca Seca2g01679 Chr2 30792222 30794157 -
Spst Spst4g02912 Chr4 68740380 68746160 +
Tpr Tpr4g0802 Chr4 7437016 7443373 -
Tsu Tsu06g00506 Chr06 4244976 4248777 -
Vimu Vimu9g01079 Chr9 18030065 18032314 -