Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco1g01470 | ATGGTAACTGCTTTCACTGGCAACATGAAGAGAGCTGCTGCTGGACTTAGACGCATTAATCTTGATGGTCTACGATGGCGGGTTTTCGATGCAAAAGGCCAGGTCCTTGGGAGGTTAGCATCTCAAATAGCTACTGTAATTCAAGGAAAGGATAAACCAACTTACACCCCTAATCGTGAGGATGGAGATATGTGCATTGTTCTTAATGCAAAGGATATTTGTGTGACTGGGAGAAAACTCACAGATAAGGTCTACTACTGGCATACAGGGTATACTGGCCACCTCAAGGAAAGGACTCTAAAGGATCAAATGGCCAAAGACCCTACTGAAGTCATTCGCAAAGCTGTTCTGCGTATGCTGCCTAGAAACAAACTACGTGATGACAGGGATCGAAAATTAAGGATCTTTCCTGGGAGTGAGCACCCATTTGGTGATCGGCCACTTGAACCTTATGTGATGCCTCCGAGAAGTGTACGGGAAATGAGGCCAAGAGCAAGGCGTGCGATGGTTCGAGCACAGAAGAAAGTTGAGCAGCAAGAACAGAATGGTGGTGGAAAGAAGAGAAAAAATAGAGAAGCGCAGGAAGAAACTGCATGA | 597 | 0.4573 | MVTAFTGNMKRAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVIQGKDKPTYTPNREDGDMCIVLNAKDICVTGRKLTDKVYYWHTGYTGHLKERTLKDQMAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRSVREMRPRARRAMVRAQKKVEQQEQNGGGKKRKNREAQEETA | 198 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco1g01470 | 198 | MobiDBLite | consensus disorder prediction | 146 | 198 | - | - | |
| Phco1g01470 | 198 | Pfam | Ribosomal protein L13 | 25 | 142 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Phco1g01470 | 198 | Hamap | 50S ribosomal protein L13 [rplM]. | 26 | 149 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Phco1g01470 | 198 | MobiDBLite | consensus disorder prediction | 159 | 198 | - | - | |
| Phco1g01470 | 198 | NCBIfam | 50S ribosomal protein L13 | 25 | 143 | IPR005823 | GO:0003735|GO:0005840|GO:0006412 | |
| Phco1g01470 | 198 | PANTHER | RIBOSOMAL PROTEIN L13 | 18 | 186 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Phco1g01470 | 198 | Gene3D | Ribosomal protein L13 | 23 | 167 | IPR036899 | GO:0003735|GO:0005840|GO:0006412 | |
| Phco1g01470 | 198 | FunFam | 50S ribosomal protein L13 | 23 | 167 | - | - | |
| Phco1g01470 | 198 | SUPERFAMILY | Ribosomal protein L13 | 25 | 148 | IPR036899 | GO:0003735|GO:0005840|GO:0006412 | |
| Phco1g01470 | 198 | Coils | Coil | 162 | 196 | - | - | |
| Phco1g01470 | 198 | CDD | Ribosomal_L13 | 26 | 139 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 | |
| Phco1g01470 | 198 | PIRSF | RPL13p_RPL13Aa_RPL16e_RPL13o | 9 | 193 | IPR005822 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco1g01470 | Phco-Chr1 | 50636835 | 50640508 | Proximal |