Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01808 ATGGCTTCCAACCAAGAACTCCACCTCCCTTTTAGGCTTTTGGTGGACAAAGAAAGAAACCGTGTGGTTGTGGCTGAAGCAGGTGGAGACTTGGTAGACATTTTGTTCAGTTTTCTCACCCTTCCACTAGGAACCATCATAAGGCTTGTGTCAAAGAAGCAAGTGCAAGATGAAGCAGAAGAGATTGGTTGCATCAACAATCTGTACCATAGTGTGGAAAATTCTAGTGCTGAGGTTTTCTGGAACCATATTTGCAAGAGAATGTTGCTTTGTCCACGCAACCCTTGTGAAGCACTTTGTCAGAAACTGAAGGTGAGGGTGGATGATTCAGAGCCTATGAAGTACTTCATGTGTAGCAACAAGTGTCGAAGGGGTGGTGATTGGTTCTTGAGTACTTTCGCTGAGGCTAGTTGCTCTTGTGGGAAATTGATGGACAAAGAAATGAAGTTGCATGGAGATTATAATGAAGGGACTTGTAGGGATGGTGTTTTTGTTAAGGGGAAAACCATGTACTTGATCTTTGATGATTTAAGGGTGCTACAAAGCTCTCCTGGTAACTCTGTTCAGCAACTTCTCCAACTTGGCTACAAAAACTTTCACAAGCTCACAGAAAAGTACCTAAATGTTGGCTTAAAGGAGATTTTGGACATACTAAAGCAGGCATTAATTTCCAAATCTCCTTTGAGCGACGTATTCTTAGGAAATGGAGCATCTAAGCGAGTGTGCACTTTCTCACCAAAACTCAGACCAGAGAATCAAGGCTGCTTAAATTACAATTCCATTATAAACCTTAAGGTAACAGTGAGAAAATCAAAGAAAACGATACTGTATGCTGAAGCTGAGGGAGATTTTGTTGATTTTCTATTCAGCTTTCTCACAACACCTCTTGGATCTATTCTAAAGCTATTGGATGGAAACTTTTCTCTTGGATGTATGAATAACTTGTACAAAAGTGTGAAGGATCTCAATTTATCATGGTTGAAAAATCCTTCAGGCACTCCTTTATTGAACCTCCAGGTGGCTCCTCAATTCGGTTGTAAGAGGCAGCCAACACAACTTTATGAGGAACACACACCTTGTTACTGGTATGGCACTGGAGTGTTAAAAAATAATATATGTTATGTCATTGGGAATGGAGTGATTTCTAAGGAACATAGTCTGATACAACATCCAGTAGCCATGAAACTTTTTGAGCCAAGATCTCCTGATGGCACAAGAGAGTCCTCTGTGGGCTTTGTAAGGAGGCCATCACTATTTGTTGTGTGGGATGATCTTCAAGTGACACCATTGGCAAATACTTCCAGCATTTCATTTCTGCAAAAGCTTAATGTTTCATTGGATGATTTGGAGGAGCATGAGCTGAGAATTGGGGAGACAGAGGCACTAAACCTGCTGGGAGCTTCTTTGACTTGCAAAGCTGCTTTGACAGAAGGCCTGTTCTATCTCCTGAAGAAGCCAAAGGAAGAAGCTAAAGTTTGA 1479 0.4131 MASNQELHLPFRLLVDKERNRVVVAEAGGDLVDILFSFLTLPLGTIIRLVSKKQVQDEAEEIGCINNLYHSVENSSAEVFWNHICKRMLLCPRNPCEALCQKLKVRVDDSEPMKYFMCSNKCRRGGDWFLSTFAEASCSCGKLMDKEMKLHGDYNEGTCRDGVFVKGKTMYLIFDDLRVLQSSPGNSVQQLLQLGYKNFHKLTEKYLNVGLKEILDILKQALISKSPLSDVFLGNGASKRVCTFSPKLRPENQGCLNYNSIINLKVTVRKSKKTILYAEAEGDFVDFLFSFLTTPLGSILKLLDGNFSLGCMNNLYKSVKDLNLSWLKNPSGTPLLNLQVAPQFGCKRQPTQLYEEHTPCYWYGTGVLKNNICYVIGNGVISKEHSLIQHPVAMKLFEPRSPDGTRESSVGFVRRPSLFVVWDDLQVTPLANTSSISFLQKLNVSLDDLEEHELRIGETEALNLLGASLTCKAALTEGLFYLLKKPKEEAKV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01808 492 PANTHER DUF674 FAMILY PROTEIN 6 488 - -
Cca01g01808 492 Pfam Protein of unknown function (DUF674) 8 458 IPR007750 -
Cca01g01808 492 PANTHER OS01G0153900 PROTEIN 6 488 IPR007750 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01808 Cca-Chr1 42240137 42242830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01808 - - gmx:100819920 855.129