Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03087 ATGACCGTGATGACTCCTGCTCCCATTGATCAGCAACAGCAGCAGGAGGATGAGGAGATGCTTGTCCCGCCCACCGTTCCACAGGCTGATTTGGCTGAGAATAATCATGAACCTATGGATGTGGAGCCTGCTGAGGATCCTACACCAACAAGATACGAATGGAAAATCGACAACTTTTCTAGGATGAACACGAAAAAGCTCTATTCAGACATATTTGTTGCTGGGAGTTTCAAATGGCGTGTACTTATTTTCCCAAAAGGGAACAATGTCGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAACTAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAGTTGTTAATCAAATCCATAATAAGTACACTATTAGAAAAGACACACAGCATCAGTTCAATGCACGGGAAAGTGATTGGGGTTTCACATCCTTCATGCCTCTCGGCGAATTGTATGATCCTAGTAGAGGGTATCTTATGAATGATACTCTTAAAATTGAAGCTGACGTCGTTGTCCGTAGGATTGTTGATTACTGGACTTATGATTCAAAAAAGGAGACGGGATATGTTGGGCTAAAGAACCAGGGAGCTACATGTTATATGAATTCTCTGCTCCAAACTCTGTACCATATTCCTTATTTCCGAAAGGCTGTATACCATATGCCTACAACAGAGAATGATATGCCCTCTGGAAGTATCCCATTGGCTCTGCAAAGTTTGTTTTACAAGCTCCAGTATAGTGACACCAGTGTCGCAACAAAAGAGCTGACTAAATCGTTTGGATGGGATACTTACGATTCTTTCTTGCAGCACGATGTTCAAGAACTAAATAGAGTTCTTTGTGAAAAACTTGAAGACAAAATGAAGGCAACTGTTGTTGAAGGAACTATACAGAAATTGTTTGAAGGGCACCACATGAACTATATCGAGTGCATAAATGTGGACTATAAATCAACACGAAAGGAGTCATTTTACGATCTTCAACTTGATGTCAAAGGTTGTCCTGATGTTTATGCTTCATTTGATAAGTATGTTGAAGTTGAACGTCTTGAGGGGGACAACAAATACCATGCTGAACAATATGGTTTGCAGGATGCTAAGAAAGGTGTTCTGTTCATCGATTTTCCTCCAGTTTTGCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTAAAGATTAATGATCGTTATGAGTTTCCATTGCAACTTGATCTTGATCGAGACGATAGAAAATATTTATCACCTGACGCTGATAGGAATGTCCGCAATCTTTACACACTTCATAGTGTTCTGGTTCACAGTGGTGGTGTGCACGGTGGACATTACTATGCTTTTATCAGACCCACTCTCTCTGATCAGTGGTACAAATTTGATGATGAGAGGGTGACAAAAGAAGACCCTAAACGGGCACTAGAGGAGCAATATGGTGGTGAGGAAGAGTTACCGCAGACAAATCCTGGATTCAATAACAGTCCTTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAGGAAAAAGTTGTATGCAATGTGGACGAGAAAGACATTGCTGAGCATTTAAGGGAGAGGTTGAAGAAAGAACAGGAAGAAAAAGAGCACAAAAAGAAAGAAAAGGCTGAGGCTCACCTCTACACTATCATAAAGGTGGCACGAGACGAAGACCTCGGAGAACAGATTGGAAAGGATATATATTTTGATCTTGTAGACCATGACAAAGTGCGGAGTTTCCGTGTCCAAAAGCAGACACCATTTAACGTTTTCAAGGAAGAGGTTGCTAAAGAGTTTGGCATACCGGTCCAATTCCAGCGCTTTTGGCTGTGGGCAAAGCGTCAAAACCATACATATCGTCCTAATCGTCCACTCACACACATTGAAGAAGCACAATCTGTTGGACAATTGAGAGAGATATCGAACAAGGTTCACAACGCAGAATTAAAATTGTTTTTGGAAGTGGAACATGGGCCGGATTTATGTCCCATTGCACCCCCTGAGAAGACAAAGGATGATATATTGCTTTTTTTCAAGTTATATGATCCTGAAAAAGAGGAACTGCGTTATGTTGGCAGACTCTTTGTGAACAGTACTGGCAAGCCATCAGAAATCTTAACAAGGTTAAATAAAATGGCTGGTTATGATCCTGATGAAGAGATTGGACTTTATGAGGAAATTAAGTTTGAACCAAATGTAATGTGCGAGCCTATAGACCAGAAATTAACATTTCGAGTAAGCCAGCTTGAAGATGGAGATATTATATGCTTTCAGAAAGTTATTGCTATAGATAACGAGGAACATATCCGCTATCCTGACGTGCCTTCATACTTAGAATATGTGCATAATCGCCAGGTTGTTCACTTTCGGTCTCTAGATAAACCAAAGGAAGATGACTTCTCCCTGGAGATGTCTCGACTTTTTACATATGACGACGTTGTGGAGAGAGTAGCTGAACAAGTTGGCTTGAACGACCCGTCCAAAATCAGGCTCACCCCACACAACTGCTACTCTCAACAACCTAAACCCCAGCCTATCAAGTACCGAGGGGTGGAACATTTATCTGATATGCTGGTTCACTACAATCAGACATCGGATATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGTTTAAAAACCCTGAAAGTTGCATTTCATCATGCTACCTCGGATGAAGTCGTTATTCATACCATCAGACTCCCAAAGCAGAGCACTGTGGGAGATGTCCTTGATGATATTAAAACAAAGGTTGAATTGTCTCGTCCTGATGCTGAGCTTAGGTTGCTTGAAGTCTTCTATCACAAAATATACAAGGTTTTCCCTCCCAATGAAAAGATTGAAAACATAAACGATCAATACTGGACACTACGAGCAGAGGAGATTCCAGAAGAAGAGAAAAATCTTTCTCCTCTTGATCGTCTAATTCACGTGTATCATTTTACTAAAGACACAACTCAGAATCAAATGCAAATTCAAAACTTTGGGGAACCCTTCTTCTTGGTCATACACGAATGTGAAACTTTGGCCGAAATTAGAGTGCGAATACAGAAGAAGCTTCAGGTTCCTGATGATGAGTTTGTCAAGTGGAAGTTTGCCTTTTTTTCATTAGGGCGACCAGAGTACCTCGAGGACTCTGACGTTGTATCAAGTCGCTTTCAGAGAAGAGATGTATATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCATACTGATAATGCTCCTAAAAGATCATATGCTGCTAACCAGAGTCGTCACACCTATGAGAAGCCAGTAAAGATTTATAATTAG 3342 0.4078 MTVMTPAPIDQQQQQEDEEMLVPPTVPQADLAENNHEPMDVEPAEDPTPTRYEWKIDNFSRMNTKKLYSDIFVAGSFKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLAVVNQIHNKYTIRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLMNDTLKIEADVVVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFLQHDVQELNRVLCEKLEDKMKATVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDDRKYLSPDADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDPKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIREADKEKVVCNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLGEQIGKDIYFDLVDHDKVRSFRVQKQTPFNVFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTHIEEAQSVGQLREISNKVHNAELKLFLEVEHGPDLCPIAPPEKTKDDILLFFKLYDPEKEELRYVGRLFVNSTGKPSEILTRLNKMAGYDPDEEIGLYEEIKFEPNVMCEPIDQKLTFRVSQLEDGDIICFQKVIAIDNEEHIRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFSLEMSRLFTYDDVVERVAEQVGLNDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATSDEVVIHTIRLPKQSTVGDVLDDIKTKVELSRPDAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLSPLDRLIHVYHFTKDTTQNQMQIQNFGEPFFLVIHECETLAEIRVRIQKKLQVPDDEFVKWKFAFFSLGRPEYLEDSDVVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAANQSRHTYEKPVKIYN 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03087 1113 FunFam Ubiquitin carboxyl-terminal hydrolase 13 797 894 - -
Vivi7g03087 1113 SMART math_3 54 155 IPR002083 GO:0005515
Vivi7g03087 1113 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 195 210 IPR018200 GO:0004843|GO:0006511
Vivi7g03087 1113 SUPERFAMILY TRAF domain-like 47 179 - -
Vivi7g03087 1113 MobiDBLite consensus disorder prediction 1 19 - -
Vivi7g03087 1113 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 434 451 IPR018200 GO:0004843|GO:0006511
Vivi7g03087 1113 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 66 520 - -
Vivi7g03087 1113 FunFam Ubiquitin carboxyl-terminal hydrolase 13 191 519 - -
Vivi7g03087 1113 MobiDBLite consensus disorder prediction 1 48 - -
Vivi7g03087 1113 Gene3D Cysteine proteinases 191 519 - -
Vivi7g03087 1113 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 194 518 IPR028889 -
Vivi7g03087 1113 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 619 871 IPR024729 -
Vivi7g03087 1113 Pfam Ubiquitin carboxyl-terminal hydrolase 194 515 IPR001394 GO:0004843|GO:0016579
Vivi7g03087 1113 CDD peptidase_C19C 192 518 - -
Vivi7g03087 1113 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 48 190 IPR008974 GO:0005515
Vivi7g03087 1113 FunFam Ubiquitin carboxyl-terminal hydrolase 13 47 190 - -
Vivi7g03087 1113 Pfam Ubiquitin-specific protease C-terminal 881 1091 IPR029346 -
Vivi7g03087 1113 Gene3D - 797 894 - -
Vivi7g03087 1113 Coils Coil 527 558 - -
Vivi7g03087 1113 Gene3D - 679 796 - -
Vivi7g03087 1113 CDD MATH 51 174 IPR002083 GO:0005515
Vivi7g03087 1113 Pfam MATH domain 56 175 IPR002083 GO:0005515
Vivi7g03087 1113 FunFam Ubiquitin carboxyl-terminal hydrolase 13 679 796 - -
Vivi7g03087 1113 ProSiteProfiles MATH/TRAF domain profile. 49 174 IPR002083 GO:0005515
Vivi7g03087 1113 SUPERFAMILY Cysteine proteinases 189 546 IPR038765 -
Vivi7g03087 1113 MobiDBLite consensus disorder prediction 475 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03087 Vivi-Chr7 95625302 95640355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03087 301 473 Miscellaneous Gene Families AT2G24640 26.966 1.26e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03087 K11838 - gmx:100800328 2060.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03087 7 95625302 95640355 Vivi7g03087 7 95625302 95640355 ECH
Vivi6g05527 6 160914559 160916858 Vivi7g03087 7 95625302 95640355 ECH
Vivi4g04336 4 170065841 170091592 Vivi7g03087 7 95625302 95640355 ECH
Vivi3g03786 3 64603801 64619117 Vivi7g03087 7 95625302 95640355 PCT
Vivi7g03087 7 95625302 95640355 Vivi3g03787 3 64603801 64619116 PCT