Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03787 ATGACCGTGATGATGTCCGCTCCCATTGACCAAGAGGATGAGGAGGTGCTCGTGCCACATGCTGATTTGCCTGACAACAATCACCAGCCTATGGAAGTTGTAGCTCAACCTGAAGCTGCCAATACTGTTGAGAGCCAGCCTGTCGCCGATCCTCCACAAACCAGATTCACATGGAGAATTGACAATTTTACTAGGCTGAATACAAAAAAGCTCTATTCAGAAGTATTTGTTGTTGGTACTTATAAATGGCGCGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTACTTGTCCATGTATTTGGATGTCGCAGATTCAACAAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCCTGGCAATTGTTAATCAAATCCATAATAAGTTTTCTGTGAGAAAAGACACACAACATCAATTTAATGCACGAGAAAGTGATTGGGGTTTCACATCTTTCATGCCTCTTGGTGAATTGTATGACCCTAGTAGAGGTTATCTCGTGAATGATACTCTTATAATCGAAGCCGAGGTTCTTGTTCGTAAGATTGTTGACTACTGGAATTATGATTCAAAGAAGGAGACCGGCTATGTTGGGCTTAAGAACCAAGGAGCTACCTGTTACATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTAGAAAGGCTGTATACCATATGCCAACAACTGAAAATGATATGCCATCTGGAAGCATCCCTTTGGCTTTGCAAAGTTTATTCTACAAGCTCCAATATAGTGACACCAGCGTTGCCACAAAGGAACTGACAAAATCTTTTGGATGGGATACATACGATTCTTTCATGCAGCACGATGTTCAAGAGCTAAATCGGGTCCTTTGTGAAAAACTTGAAGATAAAATGAAGGGAACTGTTGTCGAGGGAACAATACAAAAGTTATTTGAAGGACACCATATGAACTACATAGAGTGCATCAATGTGGACTACAAATCAACTAGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTCAAAGGTTGTCGTGATGTTTATGCTTCCTTTGATAAGTATGTTGAAGTTGAACGTCTTGAAGGGGATAACAAATATCATGCTGAGCAGTATGGTTTGCAGGATGCTAAGAAGGGTGTCCTATTTATTGATTTCCCTCCTGTCCTTCAGCTTCAGCTGAAAAGATTTGAATACGACTTTATGCGAGATACTATGGTTAAGATAAATGACCGATATGAGTTTCCCTCACAACTTGATCTTGATCGTGAGGATGGAAAATATCTATCACCTGATGCTGATAGGAGTGTCCGCAATCTTTACACACTCCACAGTGTTTTGGTTCATAGTGGAGGCGTGCATGGTGGGCATTACTATGCTTTTATCCGACCAACTCTCTCTGAACAGTGGTACAAATTTGATGATGAGAGGGTGACAAAGGAAGACAATAAGCGGGCACTAGAGGAGCAATATGGTGGTGAGGAAGAGTTACCACAAACAAATCCTGGATTCAATAATCCGCCGTTTAAATTCACCAAATACTCAAATGCCTATATGCTGGTGTATATACGTGAAAGTGACAAGGACAAAATCATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAAAAGGAACATAAAAAGAAAGAAAAGGCAGAGGCCCATCTTTATACAATTATAAAGGTGGCACGAGACGAAGACATTGAAGGGCAGATGGGAAAGGATATCTACTTTGATCTTGTAGACCACGACAAAGTTAGGAGTTTCCGTGTACAAAAGCAGACTCCTTTTAACGTTTTCAAGGAAGAGGTTGCGAAAGAGTTTGGCATACCAGTTCAATTTCAGCGCTTTTGGCTATGGGCTAAGCGACAAAACCATACTTATCGGCCTAATAGACCATTAACACACATTGAGGAAACACAAACTGTCGGACAATTGAGAGAAGTGTCAAACAAGGTTCACAATGCAGAACTTAAGTTGTTTTTGGAGGTGGAGAAGGGGATGGATTTATGTCCCATTGCATCACCCGACAAGACAAAAGATGATATATTACTTTTCTTCAAGCTATACGATCCTGAAAAAGAGGAGCTTCGCTATGTTGGAAGGCTCTTTGTGAAGGGTACTGGCAAGCCATCAGAAATCTTAACAAGGCTAAATGAAATGGCTGGTTATGATCCTGAAGAAGATATTGTACTTTATGAGGAGATTAAGTTTGAGCCAAATGTCATGTGTGAACCCATTGATAAGAAAGTAACATTCCGATCAAGCCAGCTGGAGGATGGAGATATTGTATGCTTTCAGAAAGCTCCCCCAGTGGTGGATAATGAGCAACAAGTCCGCTATCCAGATGTTCCATCATATTTAGAATATGTTCATAACCGCCAGGTGGTTCATTTTCGATCTCTGGACAGACCCAAGGAAGATGACTTCTCTTTGGAGATGTCAAGGCTTTATACATATGATGATGTGGTGGAGAGAGTAGCTCAACAACTTGGCTTGGATGATCCATCCAAAATTCGTCTTACCCCTCACAACTGCTACTCTCAACAACCAAAACCCCAGCCTATTAAGTACCGAGGCGTTGATCATTTGTCTGATATGCTAGTTCATTACAATCAGACATCAGATATATTATACTATGAAGTGCTCGACATCCCTCTACCCGAATTACAAGGCTTGAAAACTCTGAAAGTTGCATTTCATCATGCCATCAAGGACGAGGTGGTTAGTCACACCATCAGACTCCCAAAGCAGAGCACTGTTGGTGATGTCCTTGATGATCTTAAAACAAAGGTGGAGTTATCTCATCCTGATGCTGAGCTACGTCTGCTTGAAGTCTTCTATCACAAGATATACAAGGTGTTCCCATCCAATGAAAAGATTGAAAACATTAATGATCAATACTGGACATTGCGAGCAGAAGAGATTCCAGAAGAAGAGAAAAACATTGGTCCACAGGATCGGCTTATTCACGTGTACCATTTTACTAAAGACACTGCTCAAAATCAAATGCAAATTCAAAACTTTGGAGATCCTTTTTTCTTGGTTATACATGAAGGTGAAGCTCTATCTGAAATTAAAGTGAGAATACAGAAGAAACTTCAAGTTCCTGATGAAGAGTTTAGCAAGTGGAAGTTTGCTTTTCTATCACTTGGGCGTCCTGAGTACCTTCAGGATTCGGACATTGTATCCAGCCGTTTTCAGAGGCGGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGTTTGGAGCATACTGACAATGCTCCTAAAAGATCACATGCAGTCAACCAGAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAG 3357 0.4072 MTVMMSAPIDQEDEEVLVPHADLPDNNHQPMEVVAQPEAANTVESQPVADPPQTRFTWRIDNFTRLNTKKLYSEVFVVGTYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLAIVNQIHNKFSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLIIEAEVLVRKIVDYWNYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPSQLDLDREDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDNKRALEEQYGGEEELPQTNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDIEGQMGKDIYFDLVDHDKVRSFRVQKQTPFNVFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTHIEETQTVGQLREVSNKVHNAELKLFLEVEKGMDLCPIASPDKTKDDILLFFKLYDPEKEELRYVGRLFVKGTGKPSEILTRLNEMAGYDPEEDIVLYEEIKFEPNVMCEPIDKKVTFRSSQLEDGDIVCFQKAPPVVDNEQQVRYPDVPSYLEYVHNRQVVHFRSLDRPKEDDFSLEMSRLYTYDDVVERVAQQLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHAIKDEVVSHTIRLPKQSTVGDVLDDLKTKVELSHPDAELRLLEVFYHKIYKVFPSNEKIENINDQYWTLRAEEIPEEEKNIGPQDRLIHVYHFTKDTAQNQMQIQNFGDPFFLVIHEGEALSEIKVRIQKKLQVPDEEFSKWKFAFLSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSHAVNQNRHTFEKPVKIYN 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03787 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 195 523 - -
Vivi3g03787 1118 Pfam MATH domain 60 179 IPR002083 GO:0005515
Vivi3g03787 1118 Pfam Ubiquitin-specific protease C-terminal 886 1096 IPR029346 -
Vivi3g03787 1118 Gene3D - 684 801 - -
Vivi3g03787 1118 SMART math_3 55 159 IPR002083 GO:0005515
Vivi3g03787 1118 CDD peptidase_C19C 196 524 - -
Vivi3g03787 1118 Pfam Ubiquitin carboxyl-terminal hydrolase 198 519 IPR001394 GO:0004843|GO:0016579
Vivi3g03787 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 438 455 IPR018200 GO:0004843|GO:0006511
Vivi3g03787 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 683 801 - -
Vivi3g03787 1118 Coils Coil 531 562 - -
Vivi3g03787 1118 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 198 522 IPR028889 -
Vivi3g03787 1118 Gene3D Cysteine proteinases 195 523 - -
Vivi3g03787 1118 Gene3D - 802 899 - -
Vivi3g03787 1118 CDD MATH 55 178 IPR002083 GO:0005515
Vivi3g03787 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 51 194 - -
Vivi3g03787 1118 SUPERFAMILY TRAF domain-like 51 186 - -
Vivi3g03787 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 199 214 IPR018200 GO:0004843|GO:0006511
Vivi3g03787 1118 ProSiteProfiles MATH/TRAF domain profile. 53 178 IPR002083 GO:0005515
Vivi3g03787 1118 FunFam Ubiquitin carboxyl-terminal hydrolase 13 802 899 - -
Vivi3g03787 1118 SUPERFAMILY Cysteine proteinases 193 550 IPR038765 -
Vivi3g03787 1118 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 52 194 IPR008974 GO:0005515
Vivi3g03787 1118 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 45 525 - -
Vivi3g03787 1118 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 623 876 IPR024729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03787 Vivi-Chr3 64603801 64619116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03787 182 475 Miscellaneous Gene Families AT4G31670 26.019 1.34e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03787 K11838 - gmx:100781560 2102.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03087 7 95625302 95640355 Vivi3g03787 3 64603801 64619116 PCT