Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04336 ATGAACATGACGACGACTCCTCCATTAGATCAGAATCTGGAAGAGGACTCTGAGATGCTGGTTCCTCACTCCGAAGAGGCTGTTGTTGAAGGTCCCCAACCTATGGAAGTGGTCCAACCAGAAAACACAAGTGCAGAAAACACAAGTACAGTGGATGCTATGGCAGTAGAAGATCCGCCATCTGGGAGATTCACTTGGGCTATTGACAATTTTTCAAGGCTTCAGAAGAAACATTATTCTGACGTTTTCAGTGTTGGGGGCTATAAATGGCGGATACTGATCTTTCCGAAGGGGAATAATTCTGAACATCTGTCAATGTATATAGATGTTGCAGATTCATCTTCAATGCCTTATGGTTGGACTAGATTTGCACAGTTCAGCTTATCTGTGGTTAATCAGGTTCACAGTAAATATACCATCAGAAAAGAAACACAACACCAGTTCAATGCACGGGAGAGTGATTGGGGTTTCACTAATTTCATGCCTCTTGCTGAATTGTATGATCCTGGTAGGGGTTATATCGTGGACGACAGATGCATACTTGAGGCTGATGTGAATGTGCGCAAAGATCTTGATTACTGGGCCCATGACTCAAAAAAAGAAACTGGTTGTGTAGGTTTGAAAAACCAAGGAGCTACTTGTTACATGAATTCTCTTCTTCAGACATTGTATCACATTCCTTATTTCAGAAAGGCTGTGTACCATATGCCCACAACCGAAAATGATATGCCATCTGGGAGCATCCCTCTGGCATTACAGAGTTTGTTTTACAAGTTGCAGTATAATGACAGCAGTGTATCAACAAAAGAGTTAACCAAGTCCTTTGGATGGGATACATATGATTCATTCATGCAGCATGATGTCCAAGAACTTAATAGGGTTCTTTGTGAAAAGCTAGAAGATAAAATGAAGGGAACTGTTGTTGAAGGCACTATACAGCAGTTGTTTGAAGGCCACCATATGAACTATATTGAATGCATCAATGTGGATTATAAATCAACACGAAAAGAATCATTTTATGATCTTCAGCTGGATGTCAAAGGCTGTACTGATGTGTATGCTTCTTTCGATAAGTATGTGGAAGTGGAAAAACTTGAGGGCGATAACAAGTATCACGCAGAGCAGTATGGTTTACAGGAAGCAAAGAAGGGAGTATTGTTCATTGATTTTCCACCGGTTCTTCAGCTTCAGTTAAAACGGTTCGAGTATGATTTTGTGCGAGACACTATGGTTAAGATCAATGACCGCTATGAGTTCCCCTTGCAACTAGATCTTGATAGGGATAATGGAAAATATCTATCTCCTGATGCAGACAGAAGTATCCGCAACCTGTATACACTTCACAGTGTTTTGGTTCACAGTGGTGGAGTTCATGGTGGCCACTACTATGCATATATACGTCCGACTCTTTCAAATCAGTGGTTTAAATTTGACGATGAACGAGTAACAAAAGAAGATACAAACAGAGCTTTAGAAGAGCAGTATGGTGGTGAAGAAGAGTTACCTCATACAAATCCTGGGTTCAACAACTCTCCTTTTAAATTTACAAAGTACTCAAATGCATATATGCTTGTCTATGTACGTGAAAGTGACAAGGATAAGATAATTTGTAATGTGGATGAAAAGGATATTGCCAAACACCTTCAAATAAGATTAAAGAAAGAACAAGAGGAAAAGGAGAAGAAGAAGAAGGAGAAGGCTGAGGCTCATTTGTATACCATCGTAAAGATTGCCCGTGATGATGATCTGCATGATCAAATTGGAAAGGATATGTTCTTTGATCTTGTGGATCATGATAAAGTGCGAAGTTTTCGCATCCAAAAACAGACGCCCTTTGTAATTTTCAAGGAAGAAGTTGCAAAAGAGTTTGGCATACCAGTTGAGCACCAACGCTTTTGGCTGTGGGCAAAACGTCAAAACCATACTTATCGGCCAAGTAGGCCAGTGGCAGCTCAGGAAGAAACACAGTCAGTTGGTCAGTTAAGAGAAGCTTCCAATAAGGCAAATAATGCAGAGTTGAAGCTATTTTTGGAAATAGAAAAGGGGCAGGATTTGCGCCCTATTCCTCCTCCTGAGAAGTTGAAAGAGGAGTTGTTGCTATTCTTTAAACTTTATGAACCTTCAAATGAGAAGCTTCGGTATGTTGGGAGGCTTTTTGTGATGGCTAGCAGAAAGCCAGCAGATATATTGACGAAGCTAAATGAAATGGCTGGATTTGCTCCGGATCAAGAAATTGATCTGTACGAGGAAATAAAATTTGAACCTAAAATCATGTGTGAACTTGTTGACAAGAAGGGCACTTTTCGTGATAATCAGCTAGAGGATGGTGATATTATTTGCTTCCAGAAAAGCCTTCAAGCTGGCGAGGAACAGCAATATTGCTATCCGGATGTTTATTCATTCTTTGATTATGTGCAAAACCGTCAAGTTGTTCGCTTTAGATTTTTGGAGAAACCTAAGGAGGATGAGTTCAGTCTTGAGCTGTCCAAGCTTCACACTTATGATGATGTTGTAGAAAGGGTCTCTCAACATCTTGGTTTGAATGATCCTTCTAAAATCAGACTCACATCTCATAATTGCTACTCCCAGCAACCTAAACCACAGCCTATCAAGTACCGAGGAGTGGATCATTTGTCTGACATGCTGGTTCACTACAATCAGGCTACTGATGTTCTATACTATGAAGTATTGGATATCCCTCTGCCTGAATTGCAATGTCTAAAAACGCTCAAGATTGCTTTCCATCATGATGCCAAGGATGAAGTGATGATAATTAGATTACCGAAGCATAGTACTGTGGCAGATGTAATTAATGATCTAAAATCAAAGGTAGATTTATCACACCCTGATGCCGAACTTAGATTGCTTGAAGTATTCAATCACAAGATCTATAAGATTTTCCATGTCAATGAAAATATTGAGAATATTAATGATCATTATTGGACATTACGAGCAGAAGAGATTCCGGAAGACGAGAAAAACCTTGGCCCTCATGATCGAATGATACATGTTTATCATTTTTTGAAAGACACTGCTCAAAATCAGATGCATGTTCAGAACTTTGGAGATCCGTTCTTCTTGGTTATCCGTGAGGGTGAGACATTAGCTGAAGTCAAATTGCGGGTACAAAAGAAGTTACAAGTTCCAAATGAAGAGTTTTTAAAGTGGAAGTTTGCGTTTGTTTCACTTGGTCGTCCTGAGTACCTTCAAGATTCAGATATTATTTCTAGTCGGTTTCAGAGAAGGGACATATACGGCGCATGGGAGCAATATCTTGGACTGGAGCACACAGACAATTCTCCAAGAAGATCATATACAGCCAATCAGAATCGTCATGCGTTTGATAAACCAATAAAAATCTACAACTAG 3369 0.3977 MNMTTTPPLDQNLEEDSEMLVPHSEEAVVEGPQPMEVVQPENTSAENTSTVDAMAVEDPPSGRFTWAIDNFSRLQKKHYSDVFSVGGYKWRILIFPKGNNSEHLSMYIDVADSSSMPYGWTRFAQFSLSVVNQVHSKYTIRKETQHQFNARESDWGFTNFMPLAELYDPGRGYIVDDRCILEADVNVRKDLDYWAHDSKKETGCVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYNDSSVSTKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCTDVYASFDKYVEVEKLEGDNKYHAEQYGLQEAKKGVLFIDFPPVLQLQLKRFEYDFVRDTMVKINDRYEFPLQLDLDRDNGKYLSPDADRSIRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSNQWFKFDDERVTKEDTNRALEEQYGGEEELPHTNPGFNNSPFKFTKYSNAYMLVYVRESDKDKIICNVDEKDIAKHLQIRLKKEQEEKEKKKKEKAEAHLYTIVKIARDDDLHDQIGKDMFFDLVDHDKVRSFRIQKQTPFVIFKEEVAKEFGIPVEHQRFWLWAKRQNHTYRPSRPVAAQEETQSVGQLREASNKANNAELKLFLEIEKGQDLRPIPPPEKLKEELLLFFKLYEPSNEKLRYVGRLFVMASRKPADILTKLNEMAGFAPDQEIDLYEEIKFEPKIMCELVDKKGTFRDNQLEDGDIICFQKSLQAGEEQQYCYPDVYSFFDYVQNRQVVRFRFLEKPKEDEFSLELSKLHTYDDVVERVSQHLGLNDPSKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQATDVLYYEVLDIPLPELQCLKTLKIAFHHDAKDEVMIIRLPKHSTVADVINDLKSKVDLSHPDAELRLLEVFNHKIYKIFHVNENIENINDHYWTLRAEEIPEDEKNLGPHDRMIHVYHFLKDTAQNQMHVQNFGDPFFLVIREGETLAEVKLRVQKKLQVPNEEFLKWKFAFVSLGRPEYLQDSDIISSRFQRRDIYGAWEQYLGLEHTDNSPRRSYTANQNRHAFDKPIKIYN 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04336 1122 ProSiteProfiles MATH/TRAF domain profile. 61 185 IPR002083 GO:0005515
Vivi4g04336 1122 FunFam Ubiquitin carboxyl-terminal hydrolase 13 202 530 - -
Vivi4g04336 1122 FunFam Ubiquitin carboxyl-terminal hydrolase 13 808 905 - -
Vivi4g04336 1122 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 445 462 IPR018200 GO:0004843|GO:0006511
Vivi4g04336 1122 FunFam Ubiquitin carboxyl-terminal hydrolase 13 59 201 - -
Vivi4g04336 1122 Pfam MATH domain 68 187 IPR002083 GO:0005515
Vivi4g04336 1122 FunFam Ubiquitin carboxyl-terminal hydrolase 13 690 807 - -
Vivi4g04336 1122 SMART math_3 63 166 IPR002083 GO:0005515
Vivi4g04336 1122 Coils Coil 545 570 - -
Vivi4g04336 1122 Gene3D - 690 807 - -
Vivi4g04336 1122 CDD MATH 62 185 IPR002083 GO:0005515
Vivi4g04336 1122 CDD peptidase_C19C 203 531 - -
Vivi4g04336 1122 Pfam Ubiquitin carboxyl-terminal hydrolase 205 526 IPR001394 GO:0004843|GO:0016579
Vivi4g04336 1122 SUPERFAMILY TRAF domain-like 59 192 - -
Vivi4g04336 1122 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 205 529 IPR028889 -
Vivi4g04336 1122 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 206 221 IPR018200 GO:0004843|GO:0006511
Vivi4g04336 1122 Gene3D - 808 905 - -
Vivi4g04336 1122 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 46 532 - -
Vivi4g04336 1122 Gene3D Cysteine proteinases 201 530 - -
Vivi4g04336 1122 Pfam Ubiquitin-specific protease C-terminal 892 1101 IPR029346 -
Vivi4g04336 1122 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 60 200 IPR008974 GO:0005515
Vivi4g04336 1122 SUPERFAMILY Cysteine proteinases 200 557 IPR038765 -
Vivi4g04336 1122 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 630 882 IPR024729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04336 Vivi-Chr4 170065841 170091592 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04336 K11838 - jre:109019926 1889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04336 4 170065841 170091592 Vivi4g04336 4 170065841 170091592 ECH
Vivi4g04336 4 170065841 170091592 Vivi7g03087 7 95625302 95640355 ECH