Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03786 ATGACCGTGATGATGTCCGCTCCCATTGACCAGCAAGAGGATGAGGAGGTGCTCGTGCCACATGCTGATTTGCCTGACAACAATCACCAGCCTATGGAAGTTGTAGCTCAACCTGAAGCTGCCAATACTGTTGAGAGCCAGCCTGTCGCCGATCCTCCACAAACCAGATTCACATGGAGAATTGACAATTTTACTAGGCTGAATACAAAAAAGCTCTATTCAGAAGTATTTGTTGTTGGTACTTATAAATGGCGCGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTACTTGTCCATGTATTTGGATGTCGCAGATTCAACAAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCCTGGCAATTGTTAATCAAATCCATAATAAGTTTTCTGTGAGAAAAGACACACAACATCAATTTAATGCACGAGAAAGTGATTGGGGTTTCACATCTTTCATGCCTCTTGGTGAATTGTATGACCCTAGTAGAGGTTATCTCGTGAATGATACTCTTATAATCGAAGCCGAGGTTCTTGTTCGTAAGATTGTTGACTACTGGAATTATGATTCAAAGAAGGAGACCGGCTATGTTGGGCTTAAGAACCAAGGAGCTACCTGTTACATGAATTCTCTACTCCAAACTTTGTACCATATTCCTTATTTTAGAAAGGCTGTATACCATATGCCAACAACTGAAAATGATATGCCATCTGGAAGCATCCCTTTGGCTTTGCAAAGTTTATTCTACAAGCTCCAATATAGTGACACCAGCGTTGCCACAAAGGAACTGACAAAATCTTTTGGATGGGATACATACGATTCTTTCATGCAGCACGATGTTCAAGAGCTAAATCGGGTCCTTTGTGAAAAACTTGAAGATAAAATGAAGGGAACTGTTGTCGAGGGAACAATACAAAAGTTATTTGAAGGACACCATATGAACTACATAGAGTGCATCAATGTGGACTACAAATCAACTAGAAAGGAGTCATTTTATGACCTTCAGCTTGATGTCAAAGGTTGTCGTGATGTTTATGCTTCCTTTGATAAGTATGTTGAAGTTGAACGTCTTGAAGGGGATAACAAATATCATGCTGAGCAGTATGGTTTGCAGGATGCTAAGAAGGGTGTCCTATTTATTGATTTCCCTCCTGTCCTTCAGCTTCAGCTGAAAAGATTTGAATACGACTTTATGCGAGATACTATGGTTAAGATAAATGACCGATATGAGTTTCCCTCACAACTTGATCTTGATCGTGAGGATGGAAAATATCTATCACCTGATGCTGATAGGAGTGTCCGCAATCTTTACACACTCCACAGTGTTTTGGTTCATAGTGGAGGCGTGCATGGTGGGCATTACTATGCTTTTATCCGACCAACTCTCTCTGAACAGTGGTACAAATTTGATGATGAGAGGGTGACAAAGGAAGACAATAAGCGGGCACTAGAGGAGCAATATGGTGGTGAGGAAGAGTTACCACAAACAAATCCTGGATTCAATAATCCGCCGTTTAAATTCACCAAATACTCAAATGCCTATATGCTGGTGTATATACGTGAAAGTGACAAGGACAAAATCATATGCAATGTGGATGAGAAAGACATTGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAAAAGGAACATAAAAAGAAAGAAAAGGCAGAGGCCCATCTTTATACAATTATAAAGGTGGCACGAGACGAAGACATTGAAGGGCAGATGGGAAAGGATATCTACTTTGATCTTGTAGACCACGACAAAGTTAGGAGTTTCCGTGTACAAAAGCAGACTCCTTTTAACGTTTTCAAGGAAGAGGTTGCGAAAGAGTTTGGCATACCAGTTCAATTTCAGCGCTTTTGGCTATGGGCTAAGCGACAAAACCATACTTATCGGCCTAATAGACCATTAACACACATTGAGGAAACACAAACTGTCGGACAATTGAGAGAAGTGTCAAACAAGGTTCACAATGCAGAACTTAAGTTGTTTTTGGAGGTGGAGAAGGGGATGGATTTATGTCCCATTGCATCACCCGACAAGACAAAAGATGATATATTACTTTTCTTCAAGCTATACGATCCTGAAAAAGAGGAGCTTCGCTATGTTGGAAGGCTCTTTGTGAAGGGTACTGGCAAGCCATCAGAAATCTTAACAAGGCTAAATGAAATGGCTGGTTATGATCCTGAAGAAGATATTGTACTTTATGAGGAGATTAAGTTTGAGCCAAATGTCATGTGTGAACCCATTGATAAGAAAGTAACATTCCGATCAAGCCAGCTGGAGGATGGAGATATTGTATGCTTTCAGAAAGCTCCCCCAGTGGTGGATAATGAGCAACAAGTCCGCTATCCAGATGTTCCATCATATTTAGAATATGTTCATAACCGCCAGGTGGTTCATTTTCGATCTCTGGACAGACCCAAGGAAGATGACTTCTCTTTGGAGATGTCAAGGCTTTATACATATGATGATGTGGTGGAGAGAGTAGCTCAACAACTTGGCTTGGATGATCCATCCAAAATTCGTCTTACCCCTCACAACTGCTACTCTCAACAACCAAAACCCCAGCCTATTAAGTACCGAGGCGTTGATCATTTGTCTGATATGCTAGTTCATTACAATCAGACATCAGATATATTATACTATGAAGTGCTCGACATCCCTCTACCCGAATTACAAGGCTTGAAAACTCTGAAAGTTGCATTTCATCATGCCATCAAGGACGAGGTGGTTAGTCACACCATCAGACTCCCAAAGCAGAGCACTGTTGGTGATGTCCTTGATGATCTTAAAACAAAGGTGGAGTTATCTCATCCTGATGCTGAGCTACGTCTGCTTGAAGTCTTCTATCACAAGATATACAAGGTGTTCCCATCCAATGAAAAGATTGAAAACATTAATGATCAATACTGGACATTGCGAGCAGAAGAGATTCCAGAAGAAGAGAAAAACATTGGTCCACAGGATCGGCTTATTCACGTGTACCATTTTACTAAAGACACTGCTCAAAATCAAATGCAAATTCAAAACTTTGGAGATCCTTTTTTCTTGGTTATACATGAAGGTGAAGCTCTATCTGAAATTAAAGTGAGAATACAGAAGAAACTTCAAGTTCCTGATGAAGAGTTTAGCAAGTGGAAGTTTGCTTTTCTATCACTTGGGCGTCCTGAGTACCTTCAGGATTCGGACATTGTATCCAGCCGTTTTCAGAGGCGGGATGTTTATGGTGCTTGGGAGCAGTATCTTGGTTTGGAGCATACTGACAATGCTCCTAAAAGATCACATGCAGTCAACCAGAATCGCCACACATTTGAGAAGCCAGTAAAGATTTATAATTAG 3360 0.4074 MTVMMSAPIDQQEDEEVLVPHADLPDNNHQPMEVVAQPEAANTVESQPVADPPQTRFTWRIDNFTRLNTKKLYSEVFVVGTYKWRVLIFPKGNNVDYLSMYLDVADSTSLPYGWSRYAQFSLAIVNQIHNKFSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLIIEAEVLVRKIVDYWNYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPSQLDLDREDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDNKRALEEQYGGEEELPQTNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDIEGQMGKDIYFDLVDHDKVRSFRVQKQTPFNVFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTHIEETQTVGQLREVSNKVHNAELKLFLEVEKGMDLCPIASPDKTKDDILLFFKLYDPEKEELRYVGRLFVKGTGKPSEILTRLNEMAGYDPEEDIVLYEEIKFEPNVMCEPIDKKVTFRSSQLEDGDIVCFQKAPPVVDNEQQVRYPDVPSYLEYVHNRQVVHFRSLDRPKEDDFSLEMSRLYTYDDVVERVAQQLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHAIKDEVVSHTIRLPKQSTVGDVLDDLKTKVELSHPDAELRLLEVFYHKIYKVFPSNEKIENINDQYWTLRAEEIPEEEKNIGPQDRLIHVYHFTKDTAQNQMQIQNFGDPFFLVIHEGEALSEIKVRIQKKLQVPDEEFSKWKFAFLSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSHAVNQNRHTFEKPVKIYN 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03786 1119 SMART math_3 56 160 IPR002083 GO:0005515
Vivi3g03786 1119 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 200 215 IPR018200 GO:0004843|GO:0006511
Vivi3g03786 1119 FunFam Ubiquitin carboxyl-terminal hydrolase 13 684 802 - -
Vivi3g03786 1119 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 46 526 - -
Vivi3g03786 1119 Pfam Ubiquitin carboxyl-terminal hydrolase 199 520 IPR001394 GO:0004843|GO:0016579
Vivi3g03786 1119 Gene3D - 803 900 - -
Vivi3g03786 1119 Gene3D - 685 802 - -
Vivi3g03786 1119 FunFam Ubiquitin carboxyl-terminal hydrolase 13 52 195 - -
Vivi3g03786 1119 ProSiteProfiles MATH/TRAF domain profile. 54 179 IPR002083 GO:0005515
Vivi3g03786 1119 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 53 195 IPR008974 GO:0005515
Vivi3g03786 1119 Coils Coil 532 563 - -
Vivi3g03786 1119 FunFam Ubiquitin carboxyl-terminal hydrolase 13 803 900 - -
Vivi3g03786 1119 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 439 456 IPR018200 GO:0004843|GO:0006511
Vivi3g03786 1119 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 199 523 IPR028889 -
Vivi3g03786 1119 SUPERFAMILY TRAF domain-like 52 187 - -
Vivi3g03786 1119 Gene3D Cysteine proteinases 196 524 - -
Vivi3g03786 1119 Pfam Ubiquitin-specific protease C-terminal 887 1097 IPR029346 -
Vivi3g03786 1119 Pfam MATH domain 61 180 IPR002083 GO:0005515
Vivi3g03786 1119 SUPERFAMILY Cysteine proteinases 194 551 IPR038765 -
Vivi3g03786 1119 CDD MATH 56 179 IPR002083 GO:0005515
Vivi3g03786 1119 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 624 877 IPR024729 -
Vivi3g03786 1119 CDD peptidase_C19C 197 525 - -
Vivi3g03786 1119 FunFam Ubiquitin carboxyl-terminal hydrolase 13 196 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03786 Vivi-Chr3 64603801 64619117 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03786 183 476 Miscellaneous Gene Families AT4G31670 26.019 1.31e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03786 K11838 - gmx:100781560 2108.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g03786 3 64603801 64619117 Vivi7g03087 7 95625302 95640355 PCT