Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g00165 ATGAGAACAGGAAGCTGCGCCGTGCAACAGGGTCTAACCCCGGAAGCTGCAAGCATAGTGAAGCAAGCGGTGACACTCGCGAAGCGTCGCGGGCACGCGCAGGTGACGCCGCTCCACGTTGCGAACACGATGCTCTCGATCACCAACGGCCTTCTACGAACCGCGTGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCCCTGGAGCTTTGCTTCAACGTTGCGCTCAATCGCTTACCGGCTTCAACCTCTTCCAGCCCCATGTTGCAAGGCTCTCACCACCACCACTCTCACGCCTGCCCCTCCATCTCCAACGCTTTGGTTGCCGCCTTCAAACGCGCTCAGGCGCACCAACGACGTGGATCCATCGAGAATCAACAACAGCCTCTTCTGGCAGTGAAAATAGAACTGGAGCAACTCATTATCTCGATCTTGGATGACCCTAGCGTTAGCCGAGTCATGAGGGAGGCTGGGTTCTCCAGCACCCAAGTGAAAAGCAACGTTGAACAAGCGGTTTCTCTGGAAATATGCTCTCAGAACAATGGTAGTGGCAATAACAGTAACAGTAACGGTAATAGTAATACTAAGACAAAGGAAAACAGTGGCAGTGGAGAGAAAGGGTTGGTGTTGGATCCCATTAGGGGTGAGGATGTTGCTAGTGTTATTGAGAATTTGGCGAGTCAGAGAAAGAGAAGTGTTGTGATTGTAGGAGAGTGTGTTACGAGTATGGAGAGTGTGGTTAGAGGAGTGATGGAAAAGGTTGATAGAGGGGATGCTGGTGAGTGTCTCAGGGGTGTGAAGTTTATCCCTCTTTCTCTTTCTTCTTTTGGGAATGTTTCGAGAGTGGAAGTTGAGCAAAAGATTGAAGAGTTGAGAAATCTTGTGAAGAGAAGTGAAGAACACAACAAAGGGTATGTTTTGTATCTGGGAGATCTCAAATGGGTGTTTGATTACAGAAGTCGTGGATCACAAGGGAGAGCGTGTTATTGTCCCGTGGATCACATGGTGATGGAGATTGGGAAGCTTGTGAATGGGTTTGAAGAAAATGGTGGAAGGTTTCGGTTGATGGGTGTTGCCACTTTTCAAGCTTACATGAGATGCAAAAATGGCCAACCATCGTTGGAGACTCTTTGGGATCTTCATCCCATTACTATCCCTGCCGGAACCTTGCGCTTGAGTCTCATCACTGACAGTGGTGTAGAAAATGAGGCCATAAACAAGAAAGCTGACAAGAGAAGTAGCTGGCTCTTACTCGAAGGAGTGGAGGATGAACACAAACAACAACCTTGTTTCGCGGAAGCTTCCACCAAGAATGAGACCGAAATTCGAAGCTTTCAAAGCAGTACTTGTAATAGTGACTCCTCAACTTCAACCCTCCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCTACAATGATCAGAATTGTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAACTCTATGTGCAGTTCAATCCAAAAGCAACCTTATCCTTCGGACAAAACACTCACATTATCCTCAGTGTCACCCACTTCCTCAACCTCAGGTTTCTCATACGAACAACAACATTCGAATTTGCACCAAACCCATCACGAGTGGCAAGTGGGTTCACCCAAAGACTCATTGAACAACCACCATTTCTGGGTCTCAAACAATGGATGCAACAACCCCAAGGAACCAACTTTGCGAGTGTACATTCCAGAGAACAAGGACAACAACACAAAGCAACCATTCTCATCTCCCAACCCTAACTCCGCTTCTTCCAGTGACGTCATGGAAGTGGAGCACGTGAGCAGGTTCAAAGAGTTGAACTCGGAGAACTTGAAAACACTGTGCAATGCTTTGGAGAAAAAGGTGTCGTGGCAGAAGGATATAATACCGGAAATTGCGAGCACCATTTTGCAGTGTCGTTCTGGCATGGTGAGAAGAAAAGGAAAAGTGAGAAACAGTGAAGAAGTGAAAGAAGAAACGTGGTTGGTGTTCCAAGGTGTTGATGTGGAAGCTAAAGAGAAAATAACAAGAGAATTGGCTCGGCTTGTTTTTGGATCCCACAACCACGTCGTTTCCATAGCATTGAGTAGTTTCGCGTCGACAAGAGCAGATTCAACTGAGGATTATAGCAGGAACAAGAGATCGAGAGAAGAAACAAGTTGCAGTTACATAGAGAGGTTCGCAGAAGCAATGATGAACAACCCTCATAGAGTGTTTCTTGTTGAAGATATAGAACAAGCGGATTATTGTTCTCAACTTGGTTTCAAAAGGGCCATGGAGAGAGGAAGAGTTGCGGATTCAAACGGTGAAGAGATTGCACTTTGTGACGCAATCATCATTCTGAGCTGTGAAAGTTTCAGTTCAAGATCAAGGACTTGTTCTCCTTCGATCAAACAAAAATCGATGTCTGAGGAAGAAAAGATCAATGGTGACATTGGAACTTTGGAGGAGACAAGCCCTTGTGTTTCTTTGGATTTGAATATTTCCATTGATGACGAGAACGAGGTTGAGGATCGATCGGTGGATGAAATTGGGCTTCTTGAATCCGTGGACAGAAAGATTATATTCAACTTTCAGGAATTGTGA 2595 0.4613 MRTGSCAVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLSITNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHHHHSHACPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQNNGSGNNSNSNGNSNTKTKENSGSGEKGLVLDPIRGEDVASVIENLASQRKRSVVIVGECVTSMESVVRGVMEKVDRGDAGECLRGVKFIPLSLSSFGNVSRVEVEQKIEELRNLVKRSEEHNKGYVLYLGDLKWVFDYRSRGSQGRACYCPVDHMVMEIGKLVNGFEENGGRFRLMGVATFQAYMRCKNGQPSLETLWDLHPITIPAGTLRLSLITDSGVENEAINKKADKRSSWLLLEGVEDEHKQQPCFAEASTKNETEIRSFQSSTCNSDSSTSTLPAWLQQYKNENKGITYNDQNCVPVGELCKKWNSMCSSIQKQPYPSDKTLTLSSVSPTSSTSGFSYEQQHSNLHQTHHEWQVGSPKDSLNNHHFWVSNNGCNNPKEPTLRVYIPENKDNNTKQPFSSPNPNSASSSDVMEVEHVSRFKELNSENLKTLCNALEKKVSWQKDIIPEIASTILQCRSGMVRRKGKVRNSEEVKEETWLVFQGVDVEAKEKITRELARLVFGSHNHVVSIALSSFASTRADSTEDYSRNKRSREETSCSYIERFAEAMMNNPHRVFLVEDIEQADYCSQLGFKRAMERGRVADSNGEEIALCDAIIILSCESFSSRSRTCSPSIKQKSMSEEEKINGDIGTLEETSPCVSLDLNISIDDENEVEDRSVDEIGLLESVDRKIIFNFQEL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g00165 864 Coils Coil 282 302 - -
Viun7g00165 864 Gene3D - 592 826 IPR027417 -
Viun7g00165 864 MobiDBLite consensus disorder prediction 180 210 - -
Viun7g00165 864 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Viun7g00165 864 Pfam Clp amino terminal domain, pathogenicity island component 23 50 IPR004176 -
Viun7g00165 864 Gene3D - 211 387 IPR027417 -
Viun7g00165 864 Gene3D - 9 174 IPR036628 -
Viun7g00165 864 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 860 - -
Viun7g00165 864 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Viun7g00165 864 MobiDBLite consensus disorder prediction 574 596 - -
Viun7g00165 864 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Viun7g00165 864 MobiDBLite consensus disorder prediction 180 203 - -
Viun7g00165 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 788 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g00165 Viun-Chr7 1176174 1180573 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g00165 - - var:108320189 1574.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g00165 7 1176174 1180573 Viun1g03225 1 40097172 40102501 ECH
Viun7g00165 7 1176174 1180573 Viun7g00165 7 1176174 1180573 ECH
Viun7g00165 7 1176174 1180573 Viun6g01137 6 20739090 20744786 ECH
Viun7g00165 7 1176174 1180573 Viun8g01793 8 28816851 28822139 ECH
Viun7g00165 7 1176174 1180573 Viun8g02547 8 34846591 34850327 ECH