Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01137 ATGCCGACGCCGGTAAGCACCGCGAGGCAGTGTCTCACGGACGAGGCGGCGCGTGCGCTCGACGACGCCGTCACGGTTGCCCGCCGCCGAAGCCACGCCCAGACCACCTCCCTCCACGCCGTCTCCGCGCTTCTCTCACTCCCATCCGCGGCGCTCCGCGACGCCTGTGCTCGCTGCCGCAGCTGCTCCTACTCCCCCCGCCTCCAGTTCCGCGCCCTCGAGCTATCTGTCGGCGTCTCCCTCGACCGCCTCCCCACAACCAAAAGTGCTGGCTCCGCCGGGGCGGATGGAGGCGCCGGCGACGAGGGTCCCCCTGTCTCGAACTCCCTGATGGCCGCCATAAAGCGGTCACAGGCGAACCAGCGGCGCCACCCGGATAGCTTCCACCTTATGCAGATGATGCAGCAGCAGCAGCATCAGACGACGTCGTTGCTGAAAGTCGAGCTGAAGCACTTCATTCTGTCTATTCTGGACGACCCTATCGTGAGTCGCGTCTTCGGCGAAGCTGGTTTCAGAAGCTACGACATCAAGCTGGCGCTTCTGCAACCACCTCCACCTTCAAGAATCTTCTCGCGGTTGACCCCTCCGGTTTTCCTCTGCAACCTGGAACCGGTTCAGAAGGGCGGTTCGCGACTGGACGAGAATTGCCGCAGAATCGTGGAGGTGGTGACGAGGAAGAGCAAAAGGAACCCTCTTTTGATGGGGGTGTACGCGAAAAGCGCTCTGAAGAGCTTCATCGAATGCGTGGAAGGTCGTAAAGGTGGGGTCTTGCCCTGTGAGCTGAATGGGTTGAGTGTGGTTTCGGTGGAGAAGGAGATTGGGGAGTTCTTGAGAGAAGGTGGGAACGGAGGGAAGATTTTCGAGGAAGTGGGTGGTTTGGTGGAGCAGTGTTCTGGTGCTGGGGTTGTGGTGTGTTTTGGGGAGATTGAGCTTTTTGTCGGGGGGAATGAGGAGGGTGTTGAGTTTGTGGTTTCGCAGTTGACGAGGTTGTTGGGTGTTCATGTTGGGAAGGTGTGGTTGGTGGGCGTGGCGGGAACCTCGGAGGCCTATTCTAAGTTCCTGAGGTTGTTCCCTACAGTCGACAAGGATTGGGATCTGCATCTCCTGACCATGACCTCTGCCACCCCTTTCATGGAAGGACTCTACCCCAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGCGGGTTCTTTTCTACAACTTCTGAGTTGAAAAATCCCGTTAGCTGTACGAATGCATCATCTTTAACACGGTGTGACACATGCAATGAAAAGTGTGAACAAGAAGTTGCTGATATTTTGAAGGTAGGTCCTGCAACTTCAGCATCTGGTTACTCAACGAGCTTGCCTTGGTTACAAAAGGTTAATGTGGAGACAGATATGGCAAAGACTAATGAAGAAAACACAAGTATGAATGGGAAGATCTTCGGATTGCAGAGGAAATGGAGTGATATTTGTCAACGTCTTCATCAAAACCGACCATTACCTGAATTTGATATTTCTAAAACAAGGTTCCAAGTTCCCTCCCTTGAGGGGTTTCAATTTGGTCCTGGAAGTAGTAGCAAAGGTCCACCCCATAGTGAAATCCAATATTCCCAAAGTGCATTTCCATTCAAACAGATATTACCAGTTTCAGTACCTTTTGACACTGTTACAATCACTGATGAAGCAGATCACATGGCAAAAGTTTCTAAGACTGGTATGCATAGTACTTGGGTTTCTCCTTCCCCTAAGGCCAATTTGAGCCTACATGATCACACACCATCTTCATCCTTGACTCCTGTGACCACTGATTTGGGATTAGGAACAATATATAAATCAGCCACTCATGAACCAGACACCCCAAAACTGAGTGATCACAAGAAGCATCTTCACAACATGCCAGATTCCCTTTCAAGTGATTTTAATCCTATGAATGAGTGCACTTCACACCAAATTGCTAGATCTTCTTCATGCACGGGTCCAAATCTAGAAGGGCATTTTGAAACAGTAGATTTCAAGTCACTGTACCATCTTCTGACTGAAAAGGTTGGGTGGCAGGATGAGGCCATATATGCTATCAATCAGACTGTGTCACGGTGTAGATCTGGTGTTGGAAAGCGTAGTAGTGGCTCACATGTTAGAGCAGACACATGGCTTGCATTCCTTGGACCTGATAGAGTTGGGAAAAGAAAAGTTGCTGCAGCACTTGCTGAGATTCTATTTGGAAACAAACAAAGCCTAATTGCTGTGGATTTGAGCTCTCAAGACAAGTTTTACCCATCAAACTCGGTTTTTGAATTCCAAGATTCATATTGTCATGATGTGCTTATGAGGAAAACAGTTGTGGACTACATTGCTTGGGAATTGATTAAAAAGCCACACTCAGTTGTTTTTCTTGATAATGTAGACCAAGCAGATTTTCTTGTGCAGAATAGTTTGTTCCAAGCAATAAGAACAGGTAAATTCTCGTACTCGCACGGAAGGGAAATCAGCATCAACAATGCAATATTTATCGTAACCTCTTTGAGTTTGGAGGAAGATCCTAAGATGTTCCCAGAGGAAAGAGTCCTAGAAGCTAAAAGATGTCAAATGCAATTATCACTTGGACATTGCTCGCAGGATGCAAAAAGGAGTGGTTGCACTAATGTGAAGGTTGGTCAAAGAAAAGCCTCGAAAACAACAATCCTGAAGAAAAGAAAGGTAGTAGAAAATGGTGATTCTGAAGAGAGAGCATCATGCAAGACACTGAAGCAGGTGATGGAGTCATCATCATCAAGGTCCTATCTGGATCTTAACATTTCTCTGGAGGAGTTTGAAGAGGACAACAACAATTGCAGTGATTATGGAAGTGAGTCCTCCATAGTTGAAAAAAACTGGTTAAGTGACTTGTGTGATGAAGTTGATGAAAAAGTTGTTTTTAAGGCTTTCAATTTTGATTCTGTTGCTGAGGAAGTAATAAAAAGCATTGACATACAATTTCGAAAGACGTTTGGGTCAGAATTTATGCTGGAAATTGAGTATGAGGTGATGACACAGATTGTTGCAGCTGCATGGTTATGTGAGAAGAAAAAAGCATTGGATGATTGGGTTGAAGATGTTCTTGGGAGAAGCTTTGGTGAAGCTAAAAAAAAGTACCAGTTTGCAGCAGAATATGTGATGAAACTTGTTAACTGTGAAACAATTTTTTTGGAAGATGAATCTGGTGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTGA 3222 0.4705 MPTPVSTARQCLTDEAARALDDAVTVARRRSHAQTTSLHAVSALLSLPSAALRDACARCRSCSYSPRLQFRALELSVGVSLDRLPTTKSAGSAGADGGAGDEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQQQQHQTTSLLKVELKHFILSILDDPIVSRVFGEAGFRSYDIKLALLQPPPPSRIFSRLTPPVFLCNLEPVQKGGSRLDENCRRIVEVVTRKSKRNPLLMGVYAKSALKSFIECVEGRKGGVLPCELNGLSVVSVEKEIGEFLREGGNGGKIFEEVGGLVEQCSGAGVVVCFGEIELFVGGNEEGVEFVVSQLTRLLGVHVGKVWLVGVAGTSEAYSKFLRLFPTVDKDWDLHLLTMTSATPFMEGLYPKSSLMGSFVPFGGFFSTTSELKNPVSCTNASSLTRCDTCNEKCEQEVADILKVGPATSASGYSTSLPWLQKVNVETDMAKTNEENTSMNGKIFGLQRKWSDICQRLHQNRPLPEFDISKTRFQVPSLEGFQFGPGSSSKGPPHSEIQYSQSAFPFKQILPVSVPFDTVTITDEADHMAKVSKTGMHSTWVSPSPKANLSLHDHTPSSSLTPVTTDLGLGTIYKSATHEPDTPKLSDHKKHLHNMPDSLSSDFNPMNECTSHQIARSSSCTGPNLEGHFETVDFKSLYHLLTEKVGWQDEAIYAINQTVSRCRSGVGKRSSGSHVRADTWLAFLGPDRVGKRKVAAALAEILFGNKQSLIAVDLSSQDKFYPSNSVFEFQDSYCHDVLMRKTVVDYIAWELIKKPHSVVFLDNVDQADFLVQNSLFQAIRTGKFSYSHGREISINNAIFIVTSLSLEEDPKMFPEERVLEAKRCQMQLSLGHCSQDAKRSGCTNVKVGQRKASKTTILKKRKVVENGDSEERASCKTLKQVMESSSSRSYLDLNISLEEFEEDNNNCSDYGSESSIVEKNWLSDLCDEVDEKVVFKAFNFDSVAEEVIKSIDIQFRKTFGSEFMLEIEYEVMTQIVAAAWLCEKKKALDDWVEDVLGRSFGEAKKKYQFAAEYVMKLVNCETIFLEDESGGVCLPARINLN 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01137 1073 CDD RecA-like_ClpB_Hsp104-like 665 835 - -
Viun6g01137 1073 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1037 - -
Viun6g01137 1073 Gene3D - 10 182 IPR036628 -
Viun6g01137 1073 ProSiteProfiles Clp repeat (R) domain profile. 8 186 IPR004176 -
Viun6g01137 1073 Pfam AAA domain (Cdc48 subfamily) 714 839 IPR003959 GO:0005524|GO:0016887
Viun6g01137 1073 Gene3D - 646 875 IPR027417 -
Viun6g01137 1073 MobiDBLite consensus disorder prediction 88 108 - -
Viun6g01137 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 836 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01137 Viun-Chr6 20739090 20744786 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01137 - - gmx:100776148 1699.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01137 6 20739090 20744786 Viun6g01137 6 20739090 20744786 ECH
Viun6g01137 6 20739090 20744786 Viun1g03225 1 40097172 40102501 ECH
Viun6g01137 6 20739090 20744786 Viun8g01793 8 28816851 28822139 ECH
Viun1g03225 1 40097172 40102501 Viun6g01137 6 20739090 20744786 ECH
Viun7g00165 7 1176174 1180573 Viun6g01137 6 20739090 20744786 ECH
Viun6g01137 6 20739090 20744786 Viun8g01793 8 28816851 28822139 PCT