Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03225 ATGCCCACGCCCGTCGCAGCGGCGCGTCAATGCCTAACCGCCGACGCCGCCCGCGCCCTCGACGAGGCCGTCTCCGTCGCCCGCCGACGGGGCCACGCCCAGACCACCTCTCTACACGCGGTCTCCGCCCTCCTCTCCCTCCCCTCCTCCTCCCTCCTCCGCGACGCATGCTCACGCGCCCGCAACTGCGCGTACTCCCCACGCCTGCAGTTCAAGGCCCTCGACCTCTGCCTCTCCGTCTCACTCGACCGCGCGCCGTCGTCGCACAGCCACCTCTCTTCCGACCATGATCCCCCCGTCTCCAACTCCCTCATGGCCGCCATCAAACGCTCACAGGCCAACCAGCGGCGCCACCCTGATAACTTCCACTTCTATCACCACCAACAAACTCACCATAACCTAAACATAAACCAAAACCAAAACCACCAACAACCCTTCTCTGTTTCTTCCGTCAAGGTAGAGCTTCAGCATTTGATTCTGTCAATCCTGGACGACCCCGTCGTAAGCCGGGTCTTCGCCGAAGCGGGTTTCCGGAGCTCCGACATCAAACTCGCCATCCTCCGCCCTCTGCGCCCCCGCGGGCCGCCGATTTTCCTCTGCAATTTATCCGAGCCGCCACGGCGGTTTCCTTTCTTCTTCGGCGGGGATGACGATGGCGGTGAGAATTTCCGGCGAATCGGGGAGGTTCTGGTGCGGAGCCGGGGGCGGAACCCGCTGCTTCTTGGAGCGTGCGCCGGCGACGCTCTCCGGAGCTTTGTGGAGGCTGTGGAGAAGCGGAGGGAGGGGGTTCTGCCGGTGGAGCTGTCCGGGCTGAAGGTGGTTTGCATTGCGGATGAGGTGGCTAGTGGGGATGCGGAGGGAGTGGGGAAGCGCGTGCGGGAGATTGGAAGCTTGGCGGAGCAGTGTGTGGGGCCAGGTGTTGTTGTGAGTTTCGGGGACTTGAAGGGTTTTGTGAGCGATGAAGAAAGTGGTGGTGAGGGTTTGAGGGGTGTGGTTGGGGAATTGGCGAAGCTGTTGCAGGTTCATTATGATAAGTTTTGGTTAATGGGTGCTGCTGCTAGTTATGAGAGTTACTTGAAATTCGTGGGGAAGTTTCCTTGCATAGAGAAAGAGTGGGATTTGCAGCTTCTGCCTATCACCTCTGTCAAGCCTTCTGAATCCTATCAACGCCCCAGGTCCAGCTTAATGGATTCATTTGTGCCATTTGGTGGCTTTTTTTCGTCACAGTCTGATTTGAAAGGTCCACCTAATGGATCGTTTTATTGTGTTCCGCACTGTCATCAGTGTGGTGAAAGGTGTGAACATGATGTTCTTGGTGCTTCCAAGGAAAGACTTTCTGCTTCTTCAGCTGCCGATTCCCACAATTCTAGCTTGCCTCCGTGGTTACAGATTGCAGAATTTGGCACATCAAAGGGATTGAATGTTAAGACCAAAGATAATGACGTTTTGCTCGATAGTAGTGAATCTGGGCCACTGCGCAAGAGCTTAGACAAGTTATCCCAGCATCTGCACCAGCAAGATGCAAATACCTTTCCAACTGTTGTGGGGTTTCAGTGTGGTGCTGACAAGAAAAAGGAAGATGCTGACAATTGCAGCAGAAAAATGACAGACAAATCACCCAGTGACTACATCAATCTCAACTCCCATGTACCTGTTGGCATGCAAATGATGCCTGTGTCACACTCAAGTAGTCCTTTTCCTGCAGTTTTCAAGGCAAAGCAGGAGAGACATACTTCAAAACTTGCTGAGATATTTCAGAAAGTGGAAGATCACGAGTCAGGTGACCTAAGATCGTGCAACATGTCCAATTCAAGCGTGTGTGATGGAAGTCAAATGTCTCCCACATCTGTAACTTCTGTAACCACAGACCTCGGGTTAGGAATATGCTCTTCTCCTACCAGCAATAAGCTGAAAAAACCTACTGTTCAATACACAATGGAGCCTCCAAAGGAAATCCCAAGTCTGTTTTCTTCAAACTTAAATTTGGCTGATGGGAATATCTTGAAGCATCCATCGCAGTCTTCATCCTGCTTAAGTTTCGACTATTGTGGACAAGTCGATACGAAAAATCCAAAATTTCTTTTTGAAGCTCTTTCCAAAGAGGTAAGCTGGCAAGACGAAGCTTTACAGGCTATCATCAAAACAATAGTTTGCAGCTCAACAAAGAGGGTCAAACACCGTGGAGTAAATCAGCCCGGAGACATCTGGATGAATTTTGTTGGACCTGACAGACATGGTAAAAAGAAAATTGCCGTTTCTCTAGCCGAGTTATTGTATGGCAGCCGAGAAAGCTTTATTTTTGTGGATCTAGGTTATGAAGAAATGAAAGGATGCAATGCGAAATTCAGAGGGAAAACTACCCTTGATTTTATTGTAGGGGAGTGTTGCAAGAAACCCTTGTCTGTGGTTTTGCTTGAAAATGTAGACAAGGCAGATATTCTAGCTCAAAAAAGTTTGTCTCAGGCCATCAAGACAGGAAAAATAACAGACTCGCATGGACGAGAAGTTAGTGTAAACAATACTGTCTTTGTTTTATCTTTCTCAGATTACCAAAATAGTTGCATTTCAACTGGGGAACCTTCCAACTATTCTGAAGAAAGAATACTGAAGGCAAATGGGGCAGGTATCAAGCTACGCGTTGAACATGTGATTGGAGACCACAGAAGCCAGAGCATCGGTGTCACTAACAATTCAATGGATACCATTCCTAATCTAAATTTCCTAAACAAACGTAAGTTGATTGGTGACAAAGAATTTCATGATCAAGATATACTCTCTGATACAGCTAAAAGGGCACATACAGCATCAGGCTGGCAGTTAGATTTGAATCTCCCAGCCGAAGAAAATGAACAGAAACTAACCAATGAAGGAAATCCCGAACATGTCCCAACCCAAAACCAAAGCCTTTGGTTGCAAAATTTGTGTGATCTGGTTGATGAAACAGTTGTTTTTAAACCTTATGATTTTGATGCACTTGCGGATAGATTGTTGAATGTGATCAGAGGTAACTTCAAAAAGATTCTTGGATCCGAGTGTGTATTACAGATCCAGAAAGAAGTAATGGACCAATTGGTTGCAGCTCAATATGTCTCGGACAGGGATTCGGAGGTGGAGAAGTGGGTGGAGGAAGTTCTATGTGGAGGATTTACAGAAATACAGAGAAGGTACAACCTCACTGCTAGTTCTATTGTAAAACTTGGTACGTATCCAGAACAAGCTCCTGGTGTACACCTTCCCCCAAGGATAATTTTAGATTGA 3258 0.4831 MPTPVAAARQCLTADAARALDEAVSVARRRGHAQTTSLHAVSALLSLPSSSLLRDACSRARNCAYSPRLQFKALDLCLSVSLDRAPSSHSHLSSDHDPPVSNSLMAAIKRSQANQRRHPDNFHFYHHQQTHHNLNINQNQNHQQPFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSDIKLAILRPLRPRGPPIFLCNLSEPPRRFPFFFGGDDDGGENFRRIGEVLVRSRGRNPLLLGACAGDALRSFVEAVEKRREGVLPVELSGLKVVCIADEVASGDAEGVGKRVREIGSLAEQCVGPGVVVSFGDLKGFVSDEESGGEGLRGVVGELAKLLQVHYDKFWLMGAAASYESYLKFVGKFPCIEKEWDLQLLPITSVKPSESYQRPRSSLMDSFVPFGGFFSSQSDLKGPPNGSFYCVPHCHQCGERCEHDVLGASKERLSASSAADSHNSSLPPWLQIAEFGTSKGLNVKTKDNDVLLDSSESGPLRKSLDKLSQHLHQQDANTFPTVVGFQCGADKKKEDADNCSRKMTDKSPSDYINLNSHVPVGMQMMPVSHSSSPFPAVFKAKQERHTSKLAEIFQKVEDHESGDLRSCNMSNSSVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKLKKPTVQYTMEPPKEIPSLFSSNLNLADGNILKHPSQSSSCLSFDYCGQVDTKNPKFLFEALSKEVSWQDEALQAIIKTIVCSSTKRVKHRGVNQPGDIWMNFVGPDRHGKKKIAVSLAELLYGSRESFIFVDLGYEEMKGCNAKFRGKTTLDFIVGECCKKPLSVVLLENVDKADILAQKSLSQAIKTGKITDSHGREVSVNNTVFVLSFSDYQNSCISTGEPSNYSEERILKANGAGIKLRVEHVIGDHRSQSIGVTNNSMDTIPNLNFLNKRKLIGDKEFHDQDILSDTAKRAHTASGWQLDLNLPAEENEQKLTNEGNPEHVPTQNQSLWLQNLCDLVDETVVFKPYDFDALADRLLNVIRGNFKKILGSECVLQIQKEVMDQLVAAQYVSDRDSEVEKWVEEVLCGGFTEIQRRYNLTASSIVKLGTYPEQAPGVHLPPRIILD 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03225 1085 Gene3D - 675 882 IPR027417 -
Viun1g03225 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 694 1026 IPR027417 -
Viun1g03225 1085 ProSiteProfiles Clp repeat (R) domain profile. 8 195 IPR004176 -
Viun1g03225 1085 Gene3D - 10 189 IPR036628 -
Viun1g03225 1085 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1054 - -
Viun1g03225 1085 Pfam Clp amino terminal domain, pathogenicity island component 153 187 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03225 Viun-Chr1 40097172 40102501 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03225 - - gmx:100800606 1775.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03225 1 40097172 40102501 Viun1g03225 1 40097172 40102501 ECH
Viun7g00165 7 1176174 1180573 Viun1g03225 1 40097172 40102501 ECH
Viun6g01137 6 20739090 20744786 Viun1g03225 1 40097172 40102501 ECH
Viun8g01793 8 28816851 28822139 Viun1g03225 1 40097172 40102501 ECH
Viun1g03225 1 40097172 40102501 Viun6g01137 6 20739090 20744786 ECH
Viun1g03225 1 40097172 40102501 Viun8g01793 8 28816851 28822139 ECH