Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03070 ATGGCTTCTTCAACTAAAACCTTTTCCATATTGTTCACTGTTTTTCTCTTCCTATTCCCTTTAGCAGTTTTATCCCACCCCAGAAGCTCACCGGTTCCCACTACCGGCTTCGCCCTCCTACCAGGTGATTCCAACACTCTCCCTGTACCTCCCGCTTGGTCCAGCCGATTGTGGGGTCGCACCCTTTGCTCCATCAACATTACCGGCAAGTTCTCATGTGTCACCGGTGACTGCGGGACGTCGACAGTAGAATGCACCGACAGGAACCCAGTCCCACCAGTTACTCTGGTAGAGTTTGATTTTAACGGAACGTCCTACGACATCAGCCTTGTGGAAGGTTTCAACCTTCCTGTAAGAGTGGCTCCCACGGTTGAAAAGTGTTTGGCGACTAATTGCTTGACGGACTTGAACACGGCTTGTTCGATTATTTTGAAGGTGGTTAGGGATGGACAGGTAGTAGCATGCAAAAGCACGTGCGAAACTGAGGCATGCCTCAGTTCACTGTTTTTCAAGAGGGCATGTTCTGGCGCTCAAGTCTACACTCACGATGATGCCTTCTTCACTTGTTCATCTTCTCATTACACAGTCACTTTCTGTCCCACCTCCAAAAGTTGGAGGAAGGCAGAGAAGAAAAAAGAGGCTTCAAGGAAAAACGTAGTAAAATACACAGGCGTGTTAGCTTTTATTAGCGTTATTTGTGGCTTTATAATATTCCGAATAAGATTACGTTTATCAAACAGAGACTGTGAAATCAGCTTGAGCGCAGGAACTATACAGCTGACACCACAAATAGCATAG 798 0.4662 MASSTKTFSILFTVFLFLFPLAVLSHPRSSPVPTTGFALLPGDSNTLPVPPAWSSRLWGRTLCSINITGKFSCVTGDCGTSTVECTDRNPVPPVTLVEFDFNGTSYDISLVEGFNLPVRVAPTVEKCLATNCLTDLNTACSIILKVVRDGQVVACKSTCETEACLSSLFFKRACSGAQVYTHDDAFFTCSSSHYTVTFCPTSKSWRKAEKKKEASRKNVVKYTGVLAFISVICGFIIFRIRLRLSNRDCEISLSAGTIQLTPQIA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03070 265 PANTHER OS03G0233200 PROTEIN 22 200 IPR001938 -
Vimu7g03070 265 SUPERFAMILY Osmotin, thaumatin-like protein 22 200 IPR037176 -
Vimu7g03070 265 Pfam Thaumatin family 22 200 IPR001938 -
Vimu7g03070 265 Gene3D Thaumatin 18 200 IPR037176 -
Vimu7g03070 265 ProSiteProfiles Thaumatin family profile. 27 202 IPR001938 -
Vimu7g03070 265 SMART tha2 27 200 IPR001938 -
Vimu7g03070 265 PRINTS Pathogenesis-related protein signature 190 199 IPR001938 -
Vimu7g03070 265 PRINTS Pathogenesis-related protein signature 69 98 IPR001938 -
Vimu7g03070 265 PRINTS Pathogenesis-related protein signature 56 67 IPR001938 -
Vimu7g03070 265 PRINTS Pathogenesis-related protein signature 104 120 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03070 Vimu-Chr7 26011604 26013154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03070 32 204 Receptor kinase-like Gene Family AT5G38280 38.537 6.49e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03070 - - vra:111240548 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03494 10 44607414 44610951 Vimu7g03070 7 26011604 26013154 ECH
Vimu5g02485 5 35273660 35275367 Vimu7g03070 7 26011604 26013154 ECH
Vimu7g03070 7 26011604 26013154 Vimu7g03070 7 26011604 26013154 ECH
Vimu5g02484 5 35264175 35266231 Vimu7g03070 7 26011604 26013154 ECH
Vimu7g03070 7 26011604 26013154 Vimu7g03072 7 26061280 26061903 ECH
Vimu7g03070 7 26011604 26013154 Vimu7g03070 7 26011604 26013154 PCT