Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03494 ATGTCATCCACAGCGTTGGAAGCATGCGAGAAAAATGGGAGTGCAGTATCAACAACAACGTTCACCGTCGTTAACAAATGCGACTACTCCGTGTGGCCAGGCATTCTCTCAAACGCAGGAATCGCGGAGCTTCCAACAACCGGTTTCCTTCTCCAAACCGGTGAGTCCAAAACCATAACCGCTCCAACCTCTTGGGGTGGCCGTTTATGGGGCCGCACTCTCTGCTCGCAAGACTCCGCCGGAAAATTCTTCTGCCTCACAGGCGACTGTGGCTCCGGCACAATAGAATGTGAGGGCAAAGGCGCCGTGCCGCCTGCGACCTTGGCCGAGTTCACTCTCGACGGCGACGGAGGCCTCGATTTCTTCGACGTAAGCCTCGTGGACGGCTACAACGTGCCGATGCTGGTGGCTCCCCGGGGTGGCTCCGGCGATAACTGCACTAGCACGGGGTGCGTTGGAGACCTCAACGGCGCGTGCCCTTCGGAGCTTAGGGTTACAAGCGTGGATGGAAAACAGAGCGTGGCGTGTAAGAGCGCGTGCGAGGCGTTCGGGTCCCCGCAGTATTGCTGCAAAGGCGCGTATGGGTCTCCCAACACTTGCAAGCCTACGGCATATTCGCGGATTTTCAAGAACGCTTGCCCACGCGCCTACAGCTACGCGTATGATGACAGGACTAGCACTTTTACATGTGGACACTCTGCGGATTACACCATCACCTTCTGCCCTTCCCCTAAAGATAACCCCAGGTAA 750 0.5707 MSSTALEACEKNGSAVSTTTFTVVNKCDYSVWPGILSNAGIAELPTTGFLLQTGESKTITAPTSWGGRLWGRTLCSQDSAGKFFCLTGDCGSGTIECEGKGAVPPATLAEFTLDGDGGLDFFDVSLVDGYNVPMLVAPRGGSGDNCTSTGCVGDLNGACPSELRVTSVDGKQSVACKSACEAFGSPQYCCKGAYGSPNTCKPTAYSRIFKNACPRAYSYAYDDRTSTFTCGHSADYTITFCPSPKDNPR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03494 249 CDD TLP-PA 20 241 - -
Vimu10g03494 249 ProSiteProfiles Thaumatin family profile. 18 242 IPR001938 -
Vimu10g03494 249 PANTHER OS03G0233200 PROTEIN 17 242 IPR001938 -
Vimu10g03494 249 Pfam Thaumatin family 25 242 IPR001938 -
Vimu10g03494 249 SMART tha2 21 242 IPR001938 -
Vimu10g03494 249 SUPERFAMILY Osmotin, thaumatin-like protein 19 243 IPR037176 -
Vimu10g03494 249 Gene3D Thaumatin 19 242 IPR037176 -
Vimu10g03494 249 PIRSF PR5 1 249 IPR001938 -
Vimu10g03494 249 PRINTS Pathogenesis-related protein signature 20 32 IPR001938 -
Vimu10g03494 249 PRINTS Pathogenesis-related protein signature 68 79 IPR001938 -
Vimu10g03494 249 PRINTS Pathogenesis-related protein signature 120 136 IPR001938 -
Vimu10g03494 249 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Vimu10g03494 249 ProSitePatterns Thaumatin family signature. 81 97 IPR017949 -
Vimu10g03494 249 FunFam THAUMATIN-LIKE PROTEIN 1 19 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03494 Vimu-Chr10 44607414 44610951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03494 14 243 Receptor kinase-like Gene Family AT5G38280 56.034 9.71e-91 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03494 - - gmx:100780102 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03494 10 44607414 44610951 Vimu7g03070 7 26011604 26013154 ECH
Vimu10g03494 10 44607414 44610951 Vimu10g03494 10 44607414 44610951 ECH