Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02484 ATGGATCTAACACGACTCTCATGTCTCACTCTCATTGTTCTGTTCTTCACTACCCCAGGGGTTATGGCTGCCACCTTCACATTCATTAACCGATGCGATTACACGGTGTGGCCTGGCATTCTTGCAAATGCCGGTAGCCCACCACTCCAGAGCACCGGCTTCGAGCTTCCCAAGGACACTTCTCGCACCTTCCAAGCTTCCACCGGCTGGTCCGGTCGCTTCTGGGCCCGAACCGGTTGCACCTTTGACGGATCCGGATCCGGTTCCTGCCTCACGGGCGACTGCGGCTCCGGCCAAGTCGAATGCAACGGCGCCGGAGCCGCCCCGCCGGCCACTCTCGCCGAGTTCACGCTGGGCACCGGAGGCCAAGACTTCTACGACGTCAGCCTCGTCGACGGCTACAACCTTCCTATGATCGTGGAGGGTACTGGCGGGTCGGGTCTATGTGCCACTACGGGCTGCACATCGGATCTGAACCAGCAATGCCCGGCGGAGCTGAGAGCCTCCGAGGGAAGCGCGTGTAAGAGCGCGTGTGAGGCTTTTGGTAGCCCCGAGTACTGCTGCAGCGGCGCGTATGGCTCACCAGCAACCTGTAGGCCCTCCATTTACTCGGAGATGTTCAAGGCAGCTTGCCCCAGATCGTATAGCTACGCTTACGACGACGCTACCAGTACTTTTACGTGTACCGGCGCTGATTACACCGTTACCTTCTGTCCATCCTCTCCAAGTCAGAAATCGTCACGAGATACCACCACCAACCCCATGCCCTCAACATCATCTTCATCATCATCACAAGGGTCAGGGACAGTGACGGGAACAGAAACAGGAGCAGGAATGGGATCCGAAGGAGGAGCGGTGGTGTACACGGGTGCAGACAATGGAGTTGTGTATAACTCCGTTACGGATTCCGGGTCAAGTACAGGATCCGGAGGAGAAGCAATGCTGGCAGATGGGTCATATTTAGCTGGGTTGGCCATGGGAGAGTCCTCCCCGAGAAGAACAGTTTCCATGGCGTTTGTGTCCTCAGCTAGCTTTTTTCTTATTTTCACCTTGCTTTAG 1059 0.5675 MDLTRLSCLTLIVLFFTTPGVMAATFTFINRCDYTVWPGILANAGSPPLQSTGFELPKDTSRTFQASTGWSGRFWARTGCTFDGSGSGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGQDFYDVSLVDGYNLPMIVEGTGGSGLCATTGCTSDLNQQCPAELRASEGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDATSTFTCTGADYTVTFCPSSPSQKSSRDTTTNPMPSTSSSSSSQGSGTVTGTETGAGMGSEGGAVVYTGADNGVVYNSVTDSGSSTGSGGEAMLADGSYLAGLAMGESSPRRTVSMAFVSSASFFLIFTLL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02484 352 PANTHER OS03G0233200 PROTEIN 11 239 IPR001938 -
Vimu5g02484 352 CDD TLP-PA 25 238 - -
Vimu5g02484 352 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Vimu5g02484 352 PRINTS Pathogenesis-related protein signature 124 140 IPR001938 -
Vimu5g02484 352 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Vimu5g02484 352 PRINTS Pathogenesis-related protein signature 86 115 IPR001938 -
Vimu5g02484 352 PRINTS Pathogenesis-related protein signature 229 238 IPR001938 -
Vimu5g02484 352 MobiDBLite consensus disorder prediction 239 283 - -
Vimu5g02484 352 ProSiteProfiles Thaumatin family profile. 23 239 IPR001938 -
Vimu5g02484 352 SUPERFAMILY Osmotin, thaumatin-like protein 24 240 IPR037176 -
Vimu5g02484 352 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Vimu5g02484 352 MobiDBLite consensus disorder prediction 239 276 - -
Vimu5g02484 352 FunFam THAUMATIN-LIKE PROTEIN 1 24 239 - -
Vimu5g02484 352 Pfam Thaumatin family 30 239 IPR001938 -
Vimu5g02484 352 SMART tha2 26 239 IPR001938 -
Vimu5g02484 352 Gene3D Thaumatin 24 239 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02484 Vimu-Chr5 35264175 35266231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02484 6 253 Receptor kinase-like Gene Family AT5G38280 48.062 3.54e-80 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02484 - - gmx:100801173 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02484 5 35264175 35266231 Vimu5g02484 5 35264175 35266231 ECH
Vimu5g02484 5 35264175 35266231 Vimu7g03070 7 26011604 26013154 ECH