Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03072 ATGGTTAATTATGGTACAGGATTATATTCATGGACTTTCACCATCACCAACAACTGCGCCTACACAGTGTGGCCAGCAGTTTTATCCCGCCCCGGAAACTCGCTGGTTTCCACCGGCTTCGTCCTCCTATCAGGTGATTCCAACACTCTCCCTGTACCTCCCGCTTGGTCCGGCCGATTGTGGGGTCGCACCCTTTGCTCCATCAACATTACCGGCAAGTTCTCATGTATCACCGGTGATTGCGGGACGTCGACAGAGAAATGCACCGACAGGAACCCAGTCCCACCAGTTACTCTGGTAGAGTTTGATTTTAACGGAACGTCCTACGACATCAGCCTTGTGGAAGGTTTCAACCTTCCTGTAAGAGTGGCTCCCATGGTTGAAAAGTGTTTGGCGACTAATTGCTTGACGGACTTGAACACGGCTTGTCCGATTATTTTGAAGGAGGTTAGGGATGGACAGGTAGTAGCATGCAAAAGCACGTGCGAAACTGAGGCATGCCTCAGTTCACTGTTTTTCAAGAGGGCATGTTCTGACGCTCAAGTCTACACTCACGATGATGCCTTCTTCACTTGTTCATCTTCTCATTATACAGTCATTTTCTGTCCCACCTCCAAAAGGTAA 624 0.4904 MVNYGTGLYSWTFTITNNCAYTVWPAVLSRPGNSLVSTGFVLLSGDSNTLPVPPAWSGRLWGRTLCSINITGKFSCITGDCGTSTEKCTDRNPVPPVTLVEFDFNGTSYDISLVEGFNLPVRVAPMVEKCLATNCLTDLNTACPIILKEVRDGQVVACKSTCETEACLSSLFFKRACSDAQVYTHDDAFFTCSSSHYTVIFCPTSKR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03072 207 SUPERFAMILY Osmotin, thaumatin-like protein 12 203 IPR037176 -
Vimu7g03072 207 PIRSF PR5 4 207 IPR001938 -
Vimu7g03072 207 SMART tha2 13 203 IPR001938 -
Vimu7g03072 207 ProSiteProfiles Thaumatin family profile. 10 205 IPR001938 -
Vimu7g03072 207 PANTHER OS03G0233200 PROTEIN 10 203 IPR001938 -
Vimu7g03072 207 Pfam Thaumatin family 17 164 IPR001938 -
Vimu7g03072 207 Gene3D Thaumatin 11 203 IPR037176 -
Vimu7g03072 207 PRINTS Pathogenesis-related protein signature 59 70 IPR001938 -
Vimu7g03072 207 PRINTS Pathogenesis-related protein signature 193 202 IPR001938 -
Vimu7g03072 207 PRINTS Pathogenesis-related protein signature 72 101 IPR001938 -
Vimu7g03072 207 PRINTS Pathogenesis-related protein signature 107 123 IPR001938 -
Vimu7g03072 207 PRINTS Pathogenesis-related protein signature 12 24 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03072 Vimu-Chr7 26061280 26061903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03072 6 203 Receptor kinase-like Gene Family AT5G38280 38.095 1.82e-41 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03072 - - vra:111240548 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03072 7 26061280 26061903 Vimu7g03072 7 26061280 26061903 ECH
Vimu7g03070 7 26011604 26013154 Vimu7g03072 7 26061280 26061903 ECH
Vimu5g02485 5 35273660 35275367 Vimu7g03072 7 26061280 26061903 ECH