Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02485 ATGGCTCGCTGCCTTCTCTTTCTCATCATTCTCAGCCTTGTCGCATTAACTTTCCTCTCAGAGGTACAAACAGCATCGTTCAAGATTGTGAACAAGTGTCGCCACACGATTTGGCCGGGATTACTCTCCGGCGCCACCTCGCCGCCGCTTCCCACCACCGGATTCGCCCTCCTGAGCGGAGAATCGAAGACGTTAAAAATCCCGAAATCTTGGTCTGGTCGGATATGGGCACGGACCCTCTGCGATCAAGACTCGGAGGGAAAGTTCTCTTGCGGCACCGCCGACTGCGGCTCCGGCAAAGTAGAGTGCGTCGGCGGTGCCAAGCCGCCGGCGACATTGGCAGAGCTCACCCTGAACGGCGCAGACGGGCTGGACTTCTACGACGTGAGTTTGGTCGACGGTTACAACCTTCCGATGCTGATCGTGGCGAAGGACGGTACCAGGGGCGGGTGCAGCGCAACAGGGTGTCTCGTCGACCTCAACGGCGGGTGTCCATCGGAGCTAAGGGTGGCGCGCGTGAACGGCAGCCGCAAGAGCGTGGCGTGCCGGAGCGCGTGCGAGGCCTTCGGTGATCCTAGTTTTTGCTGCAGCGGCGCGTACTCGACGCCTGACACGTGTGGTCCCTCTCCTTATTCGCTGTTCTTCAAGCACGCATGCCCACGCGCCTATAGCTACGCGTATGATGACAAGACGAGCACCTACACATGTGCCTCCGCGAACTATTTGATCATTTTCTGCCCCTTGCCCTACACCAGCCAGAAAGTTTTGGGAGCACGAAAAGATGGGGCACAACTTCCTCTGGTAAACAAAACTATGATGTACTTATCAAGGCTTCAGTCAAGTGGTTCTTCGCCGTTAGTTGTTGTTCAAACGCAGAGCATAGCTTATGTTGCCTCTGTTTTAGTGGCTCTGTTCCTGTTCTGCCCTCTATGA 933 0.5638 MARCLLFLIILSLVALTFLSEVQTASFKIVNKCRHTIWPGLLSGATSPPLPTTGFALLSGESKTLKIPKSWSGRIWARTLCDQDSEGKFSCGTADCGSGKVECVGGAKPPATLAELTLNGADGLDFYDVSLVDGYNLPMLIVAKDGTRGGCSATGCLVDLNGGCPSELRVARVNGSRKSVACRSACEAFGDPSFCCSGAYSTPDTCGPSPYSLFFKHACPRAYSYAYDDKTSTYTCASANYLIIFCPLPYTSQKVLGARKDGAQLPLVNKTMMYLSRLQSSGSSPLVVVQTQSIAYVASVLVALFLFCPL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02485 310 CDD TLP-PA 26 246 - -
Vimu5g02485 310 PIRSF PR5 1 300 IPR001938 -
Vimu5g02485 310 PANTHER OS03G0233200 PROTEIN 11 247 IPR001938 -
Vimu5g02485 310 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Vimu5g02485 310 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Vimu5g02485 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Vimu5g02485 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Vimu5g02485 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vimu5g02485 310 Gene3D Thaumatin 25 247 IPR037176 -
Vimu5g02485 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Vimu5g02485 310 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Vimu5g02485 310 Pfam Thaumatin family 31 247 IPR001938 -
Vimu5g02485 310 SMART tha2 27 247 IPR001938 -
Vimu5g02485 310 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Vimu5g02485 310 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02485 Vimu-Chr5 35273660 35275367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02485 5 247 Receptor kinase-like Gene Family AT5G38280 51.220 2.80e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02485 - - gmx:100802252 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02485 5 35273660 35275367 Vimu5g02485 5 35273660 35275367 ECH
Vimu5g02485 5 35273660 35275367 Vimu7g03070 7 26011604 26013154 ECH
Vimu5g02485 5 35273660 35275367 Vimu7g03072 7 26061280 26061903 ECH