Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g02633 ATGCTTAATATCTCATATGCATCAAACCAGAGTTATATTATCATCACGTTACCTAGCTCTACACATCATATCCCTCCAAACCCTGCTCCCAAAACAACACCTTACTTCCCCACCCTACCCTACAAATTAACACCACCACCCTCTTACCCAAGATGCCAACACCAACAACCTCATCAACCTCAATATCAACGTTTTCAGACACTGTATTCTAGTCACAACGTCAGTCTTTTCTCACTACTCCAAACCATTGTCTGCAACAACATCCAAGATTGCGACGAAACTGCAACCACCACTGCAATTTTTCACCTTGCTTTCAGTGCTGTTACATCATCCTCGGAGATGAGAACAGGAAGCTGTGCTGTGCAACAGGGTCTAACACCGGAAGCTGCAGGCATAGTGAAGCAAGCGGTGACACTGGCGAAGCGTCGTGGGCACGCCCAAGTGACGCCACTCCACGTTGCCAACACCATGCTCTCGATCACCAACGGGATTCTAAGAACCGCGTGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTTGCGCTCAATCGGTTACCGGCTTCAACCTCTTCCAGTCCCATGTTGCAAGGCTCTCACCACCACCACTCTCACGCCTGCCCCTCTATCTCGAACGCTTTGGTTGCCGCGTTCAAACGCGCTCAGGCACACCAACGACGTGGATCCATTGAGAATCAACAACAGCCTCTTCTGGCAGTGAAAATAGAACTGGAGCAACTAATTATTTCGATCTTGGATGACCCTAGCGTTAGCCGAGTGATGAGGGAGGCTGGGTTCTCTAGCACTCAAGTGAAAAGCAACGTTGAACAAGCAGTTTCTTTGGAAATATGCTCTCAGAACAATGGTAGTGGCAATAACAGTAATAGTAATAGTAATAGTAATACTAAGGCAAAGGAAAACAGCAGCAGTGGAGAGAAAGGGTTGGTGTTGGATCCCATTAGGGGTGAGGATGTTGCTAGTGTTATCGACAATTTGGGGAGTCAGAGAAAAAGAAGTGTTGTGATAGTAGGAGAGTGTGTTACAAGTCTGGAGAGTGTAGTTAGAGGAGTGATGGAAAAGGTTGATAAAGGGGATGCTGGTGAGTGTCTTAGGGGTGTCAAGTTTATCCCTCTTTCTCTTTCTTCTTTTGGGAATGTTTCGAGAGTGGAAGTTGAGCAAAAGGTTGAAGAACTTAGGAGTCTTCTGAAGGGAAGCGAACACGGCAAAGGGTATGTTTTGTATTTGGGAGATCTCAAATGGGTGTTTGATTATAGAGCTTGTGGATCACAAGGGAGAGCGTGTTATTGTCCAGTGGATCACATGGTGATGGAGATTGGGAAGCTTGTGAGTGGGTTTGAAGAGAATAATGGTGGAAGGTTTCGCTTGATGGGTGTAGCCACTTTTCAAGCCTACATGAGATGCAAAAATGGCCAACCATCGTTGGAGAATCTTTGGGATCTTCATCCCATTACTATCCCTGCGGGAAGCTTGCGTTTGAGTCTCATCACTGACAGTGGTGTAGAAAATGAGGCCATAAACAAGAAAGCTGACAACAGAAGTAGCTGGCTCTTACTCGAAGGAGTGGAGGATGATCACAAACAACAACCTTGCTTCGCGGAACCTTCCACCAAGAATGAGACCGAAATTCGAAGCTTGCAAAGCAGTACTTGTAATAGTGACTCCTCAACTTCAACCCTCCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCTACAATGATCAGAATTGTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAACTCTATGTGCAGTTCAATCCAAAAGCAACCTTATCCTTCAGACAAAACACTCACACTATCCTCAGTATCACCCTCTTCCTCAACCTCAGGTTTCTCATACGAACAACAACATTCTAATTTGCACCAAACCCATCATGAGTGGCAAGTGGGTTCACCCAAAGACTCATTGAACAACCACCATTTCTGGATCTCAAACAATGGATGCAACAACCCCAATGAACCAACTTTGCGAGTGTACATTCCAGAGAGCAAGGACACCACAAAGCAACCGTTCTCATCTCCCAACCCTAACTCCGCTTCTTCCAGTGACGTCATGGAAGTGGAGCACGTGAGCAGGTTCAAAGAGTTAAACTCAGAGAACTTGAAAACACTGTGCAATGCTTTGGAGAAGAAGGTGTCGTGGCAGAAGGATGTAATACCGGAAATTGCGAGCACCATTTTGCAGTGTCGTTCTGGCATGGTGAGAAGAAAAGGAAAAGTTAAAGAAGTGAAAGAAGAAACGTGGTTGGTCTTCCAAGGTGTTGATGTGGAAGGTAAAGAGAAAATAACAAGAGAGTTGGCTCGGCTTGTTTTTGGGTCCCACGACCACGTCGTTTCCATAGCATTGAGCAGTTTTGCGTCGACAAGAGCAGATTCAACAGAGGATTATAGCAGGAACAAGAGATCAAGAGAAGAAACAAGTTGCAGTTACATAGAGAGGTTCGCAGAAGCAATGATGAACAACCCTCATAGAGTGTTTCTTGTTGAAGATATAGAGCAAGCGGATTATTGTTCTCAACTTGGTTTCAAAAGGGCTATGGAGAGAGGGAGAGTTACGGATTCAAACGGTGAAGAGATTGCACTTTGTGACGCAATCATCATTCTGAGCTGTGAAAGTTTCAGTTCAAGATCAAGAACTTGTTCTCCTTCGGTCAAACAAAAATCGATGTCTGAGGAAGAAAAGAATGGTGACATTGGCACTTTGGAGGAGACGAGCCCTTGTGTTTCTTTGGATTTGAATATTTCCATTGATGACGAGAACGAGGTTGAGGATCGATCGGTGGATGAAATTGGGCTTCTTGAATCCGTAGACAGAAAGATTGTATTCAACTTTCAGGAATTGTGA 2919 0.4522 MLNISYASNQSYIIITLPSSTHHIPPNPAPKTTPYFPTLPYKLTPPPSYPRCQHQQPHQPQYQRFQTLYSSHNVSLFSLLQTIVCNNIQDCDETATTTAIFHLAFSAVTSSSEMRTGSCAVQQGLTPEAAGIVKQAVTLAKRRGHAQVTPLHVANTMLSITNGILRTACLQSHSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHHHHSHACPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQNNGSGNNSNSNSNSNTKAKENSSSGEKGLVLDPIRGEDVASVIDNLGSQRKRSVVIVGECVTSLESVVRGVMEKVDKGDAGECLRGVKFIPLSLSSFGNVSRVEVEQKVEELRSLLKGSEHGKGYVLYLGDLKWVFDYRACGSQGRACYCPVDHMVMEIGKLVSGFEENNGGRFRLMGVATFQAYMRCKNGQPSLENLWDLHPITIPAGSLRLSLITDSGVENEAINKKADNRSSWLLLEGVEDDHKQQPCFAEPSTKNETEIRSLQSSTCNSDSSTSTLPAWLQQYKNENKGITYNDQNCVPVGELCKKWNSMCSSIQKQPYPSDKTLTLSSVSPSSSTSGFSYEQQHSNLHQTHHEWQVGSPKDSLNNHHFWISNNGCNNPNEPTLRVYIPESKDTTKQPFSSPNPNSASSSDVMEVEHVSRFKELNSENLKTLCNALEKKVSWQKDVIPEIASTILQCRSGMVRRKGKVKEVKEETWLVFQGVDVEGKEKITRELARLVFGSHDHVVSIALSSFASTRADSTEDYSRNKRSREETSCSYIERFAEAMMNNPHRVFLVEDIEQADYCSQLGFKRAMERGRVTDSNGEEIALCDAIIILSCESFSSRSRTCSPSVKQKSMSEEEKNGDIGTLEETSPCVSLDLNISIDDENEVEDRSVDEIGLLESVDRKIVFNFQEL 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g02633 972 MobiDBLite consensus disorder prediction 689 708 - -
Vian3g02633 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 897 IPR027417 -
Vian3g02633 972 ProSiteProfiles Clp repeat (R) domain profile. 121 289 IPR004176 -
Vian3g02633 972 MobiDBLite consensus disorder prediction 293 316 - -
Vian3g02633 972 Pfam Clp amino terminal domain, pathogenicity island component 249 286 IPR004176 -
Vian3g02633 972 Pfam Clp amino terminal domain, pathogenicity island component 136 165 IPR004176 -
Vian3g02633 972 SUPERFAMILY Double Clp-N motif 125 282 IPR036628 -
Vian3g02633 972 MobiDBLite consensus disorder prediction 690 708 - -
Vian3g02633 972 Gene3D - 122 287 IPR036628 -
Vian3g02633 972 Gene3D - 323 500 IPR027417 -
Vian3g02633 972 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 114 968 - -
Vian3g02633 972 Gene3D - 704 947 IPR027417 -
Vian3g02633 972 MobiDBLite consensus disorder prediction 293 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g02633 Vian-Chr3 40904810 40908916 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian3g02633 - - var:108320189 1870.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g02633 3 40904810 40908916 Vian2g03010 2 50787712 50792712 ECH
Vian3g02633 3 40904810 40908916 Vian3g02633 3 40904810 40908916 ECH
Vian3g02633 3 40904810 40908916 Vian6g00617 6 22676071 22681240 ECH
Vian3g02633 3 40904810 40908916 Vian7g01937 7 31106017 31107837 ECH
Vian3g02633 3 40904810 40908916 Vian7g01396 7 22447230 22449731 ECH