Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03010 ATGCCCACGCCCGTCGCAGCGGCGCGTCAATGCCTAACCGCCGACGCCGCCCGCGCCCTCGACGAGGCCGTCTCCGTCGCACGCCGACGGGGCCACGCCCAGACCACCTCTCTACACGCTGTCTCCGCCCTCCTCTCCCTCCCATCCTCCTCCCTCCTCCGCGACGCCTGCTCACGCGCCCGAAACTGCGCGTACTCCCCACGCCTGCAGTTCAAGGCCCTCGACCTCTGCCTCTCCGTCTCACTCGACCGCGCGCCGTCGTCGCACAGCCACCTCTCTTCCGACCATGATCCCCCCGTCTCCAACTCCCTCATGGCCGCCATCAAACGCTCACAGGCCAACCAGCGGCGCCACCCTGATAACTTCCACTTCTATCACCACCAACAAACTCACCATAACCTGAACTTAAACCAAAACCACCAACAACCCTTTTCTGTTTCTTCCGTCAAAGTAGAGCTTCAGCATTTGATTCTGTCAATCCTGGACGACCCCGTCGTGAGCCGGGTCTTCGCCGAAGCGGGTTTCCGGAGCTCCGACATCAAACTCGCCATCCTCCGCCCTCTGCGCCCTCGCGGGCCACCGATTTTCCTCTGCAATTTATCCGAGCCGCCGCGGCGGTTTCCTTTCTTCTTCGGCGGGGAAGACGGTGGCGGCGAGAATTACCGGCGAATCGGGGAGGTTCTGGTTCGGAGCCGGGGGCGGAACCCGCTGCTTCTTGGAGCGTGCGCCGGCGACGCTCTCCGGAGCTTTGTGGAGGCTGTGGAGAAACGGAGGGAGGGTGTTCTGCCGGTGGAGCTATCGGGGCTGAAGGTGGTTTGCATTGCGGATGAGGTAGCTCGTGGGGATGCGGAGGGTGTGGGGAAGCGCGTGAGGGAGATTGGGAGCTTGGCAGAGCAGTGTGTGGGACCTGGTGTTGTTGTGAGTTTCGGGGACTTGAAGGGTTTTGTGAGCGACGAAGAAGGTGGCGGTGAGGGTTTGAGGGGTGTGGTTGGGGAATTGGCGAAGCTGTTGCAGGTTCATTATGATAAGTTTTGGTTAATGGGTGCTGCTGCGAGTTATGAGAGTTACTTGAAATTCGTGGGGAAGTTTCCTTGCATAGAGAAAGAGTGGGATTTGCAGCTTCTGCCTATCACCTCTGTCAAGCCTTCTGAATCCTATCACCGCCCCAGGTCCAGCTTAATGGATTCATTTGTGCCATTTGGTGGCTTTTTTTCGTCACAGTCTGATTTGAAAGGTCCACCTAATGGATCGTTTTATTGTGTTCCGCACTGTCATCAGTGTGGTGAAAGGTGTGAACATGATGTTCTTGGTGCTTCCAAGGAAAGGCTTTCTGCTTCTTCAGCTGCCGATTCTCATCATTCTAGCTTGCCTCCGTGGTTACAGATCGCAGAATTTGGCACATCAAAGGGATTGAATGTTAAGCAGACCAAAGATAATGACGTTTTGCTCGATAGTAGTGAATCGGGGCCACTGCGTAAGAACTTAGACAAGTTATCCCAGCATCTGCACCAGCAAGATGCAAATACCTTTCCAACTGTTGTGGGGTTTCAGTGCGGTGCTGACAAGAAAAAGGAAGATGCTGACAATTACAGCAGCAAAATGACAGACAAATCACCCAGTGACTACATCAATCTCAACTCCCATGTACCAGTTGGCATGCAAATGATGCCTGCGTCACACTCAAGTAGTCCTTTTCCTGCAGTTTTCAAGGCAAAGCAGGAGAAATATACTTCAAAACATGCTGAGATATTTCAGAAAGTGGAAGATCACGAGTCAGGTGATCTAAGATCGTGCAACATGTCCAATTCAAGCGTGTGTGATGGAAGTCAAATGTCTCCCACATCTGTAACTTCTGTAACCACAGACCTCGGGTTAGGAATATGCTCTTCTCCTACCAGCAATAAGCTAAAAAAACCTCCTGTTCAATACACAATGGAGCCTCCAAAGGAAATCCCAAGTCTGTTTTCTTCAAACTTAAATTTGGCTGATGGGAATATCTTGAAGCATCCATCGCAGTCTTCCTCCTGCTTAAGTTTTGACTATTGTGGACTAGTCGACGCAAAAAATCCCAAATTTCTTTTTGAAGCTCTTTCCAAGGAGGTAACCTGGCAAGACGAAGCTTTACAGGCTATCATCAAAACAATAGTTTGCAGCTCAACAAAAAGGGTCAAACACCGTGGAGTAAATCAGCCTGGAGACAGCTGGATGAATTTTGTTGGACCTGACAGACTTGGTAAAAAGAAAATTGCCGTTTCTCTAGCCGAGTTATTGTATGGCAGCCGGGAAAGCTTTATTTTTGTGGATCTAAGTTCTGAAGAAATGAAAGGATGCAATGCGAAATTCAGAGGGAAAACTACCCTTGATTTTATTGTAGGGGAGTGTTGCAAGAAACCCTTGTCTGTGGTTTTGCTTGAAAACGTAGACAAGGCTGATATTCTAGCTCAAAAAAGTTTGTCTCAAGCCATCAAGACAGGAAAAATAACAGACTCGCATGGAAGAGAAGTTAGTGTAAACAATACTGTGTTTGTTTTATCTTTCTCAGATTACCAAAATAGTTGCATTTCAAATGGTGAACCTTCCAACTATTCTGAGGAAAGAATACTGAAGGCAAAGAGGGGAGGTATCAAGCTACGCGTTAAACATGTGCTTGGAGACCACAGAAGCCAAAGCATCGGTGTCACTAACAATTCAATGGATGCCATTCCTAATCTAAATTTCCTAAACAAACGTAAGTTGATTGGTGACAAAGAATTTCATGATCAAGATATACCCTCTGATACAGCTAAAAGGGCACATACATCAGGCTGGCAGTTAGATTTGAATCTCCCAGCCGAAGAAAATGAACAGAAACTAACCAATGAAAAAAACCCCGAACATGTGACAACCGAAAACCAAAGCCTTTGGTTGCAAAATTTGTGTGATCTGGTTGATGAAACAGTTGTTTTTAAACCTTATGATTTTGATGCACTTGCGGATAGATTGTTGAATGTGATCAGAGGTAACTTCAAAAAGATTCTTGGATCTGAGTGTGTATTACAGATCCAGACAGAAGTGATGGACCAATTGCTTAAAGCTCAATATGTCTCGGACAGGGATTCGGAGGTGGAGAACTGGGTGGAGGAAGTTCTATGTGGAGGGTTTACAGAAATACAGAGAAGGTACAACCTCACTGCTGGTTCTATTGTAAAACTTGCTACGTATCCAGAACAAGCTCCTGGTGTACACCTTCCCCCAAGGATAATTTTAGATTGA 3252 0.4825 MPTPVAAARQCLTADAARALDEAVSVARRRGHAQTTSLHAVSALLSLPSSSLLRDACSRARNCAYSPRLQFKALDLCLSVSLDRAPSSHSHLSSDHDPPVSNSLMAAIKRSQANQRRHPDNFHFYHHQQTHHNLNLNQNHQQPFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSDIKLAILRPLRPRGPPIFLCNLSEPPRRFPFFFGGEDGGGENYRRIGEVLVRSRGRNPLLLGACAGDALRSFVEAVEKRREGVLPVELSGLKVVCIADEVARGDAEGVGKRVREIGSLAEQCVGPGVVVSFGDLKGFVSDEEGGGEGLRGVVGELAKLLQVHYDKFWLMGAAASYESYLKFVGKFPCIEKEWDLQLLPITSVKPSESYHRPRSSLMDSFVPFGGFFSSQSDLKGPPNGSFYCVPHCHQCGERCEHDVLGASKERLSASSAADSHHSSLPPWLQIAEFGTSKGLNVKQTKDNDVLLDSSESGPLRKNLDKLSQHLHQQDANTFPTVVGFQCGADKKKEDADNYSSKMTDKSPSDYINLNSHVPVGMQMMPASHSSSPFPAVFKAKQEKYTSKHAEIFQKVEDHESGDLRSCNMSNSSVCDGSQMSPTSVTSVTTDLGLGICSSPTSNKLKKPPVQYTMEPPKEIPSLFSSNLNLADGNILKHPSQSSSCLSFDYCGLVDAKNPKFLFEALSKEVTWQDEALQAIIKTIVCSSTKRVKHRGVNQPGDSWMNFVGPDRLGKKKIAVSLAELLYGSRESFIFVDLSSEEMKGCNAKFRGKTTLDFIVGECCKKPLSVVLLENVDKADILAQKSLSQAIKTGKITDSHGREVSVNNTVFVLSFSDYQNSCISNGEPSNYSEERILKAKRGGIKLRVKHVLGDHRSQSIGVTNNSMDAIPNLNFLNKRKLIGDKEFHDQDIPSDTAKRAHTSGWQLDLNLPAEENEQKLTNEKNPEHVTTENQSLWLQNLCDLVDETVVFKPYDFDALADRLLNVIRGNFKKILGSECVLQIQTEVMDQLLKAQYVSDRDSEVENWVEEVLCGGFTEIQRRYNLTAGSIVKLATYPEQAPGVHLPPRIILD 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03010 1083 Gene3D - 683 886 IPR027417 -
Vian2g03010 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 1024 IPR027417 -
Vian2g03010 1083 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1050 - -
Vian2g03010 1083 Pfam Clp amino terminal domain, pathogenicity island component 151 185 IPR004176 -
Vian2g03010 1083 Gene3D - 10 187 IPR036628 -
Vian2g03010 1083 ProSiteProfiles Clp repeat (R) domain profile. 8 193 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03010 Vian-Chr2 50787712 50792712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g03010 - - gmx:100800606 1767.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g03010 2 50787712 50792712 Vian2g03010 2 50787712 50792712 ECH
Vian3g02633 3 40904810 40908916 Vian2g03010 2 50787712 50792712 ECH
Vian6g00617 6 22676071 22681240 Vian2g03010 2 50787712 50792712 ECH
Vian7g01937 7 31106017 31107837 Vian2g03010 2 50787712 50792712 ECH
Vian2g03010 2 50787712 50792712 Vian6g00617 6 22676071 22681240 ECH
Vian2g03010 2 50787712 50792712 Vian7g01937 7 31106017 31107837 ECH