Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00617 ATGCCGACGCCGGTAAGCACCGCGAGGCAGTGTCTCACGGACGAGGCGGCGCGTGCGCTCGACGACGCCGTCACGGTTGCCCGCCGTCGAAGCCACGCCCAGACCACCTCCCTCCACGCCGTCTCCGCGCTTCTCTCACTCCCATCCGCGGCGCTTCGCGACGCCTGCGCTCGCTGCCGGAGCTGCTCCTACTCCCCCCGCCTCCAGTTCCGCGCCCTCGAGCTATCTGTCGGCGTCTCCCTCGACCGCCTTCCCACAATCAAAACTGCTGGCTCCACCGGGGCGGACGGCGGGGCTGGCTACGAGGGTCCCCCTGTTTCGAACTCCCTCATGGCCGCCATAAAGCGCTCACAGGCGAACCAGCGGCGCCACCCGGATAGCTTCCACCTTATGCAGATGATGCAGCAGCAGCAGCATCAGACGTCGTTGCTGAAAGTCGAACTCAAACACTTCATTCTTTCTATTCTCGACGACCCTATCGTGAGTCGCGTCTTCGGCGAAGCTGGTTTCAGAAGCTACGACATCAAGCTCGCGCTTCTTCAACCACCTCCACCTTCAAGGATCTTCTCGCGGTTGACCCCTCCGGTTTTCCTCTGCAACCTCGAACCGGTTCAGAAGACCGGTTCTCGGCTGGACGAGAATTGCCGCAGAATCGTGGAGGTGGTGACGAGGAAGAGCAAAAGGAATCCTCTTTTGATGGGGGTGTACGCGAAAAGCGCTCTGAAGAGCTTCATCGAATGCGTGGAAGCTCGTAAAGGTGGGATATTGCCCTGTGAGCTGAATGGGTTGAGTGTGGTTTCGGTGGAGAAGGAGATTGGGGAGTTCTTGAGGGAAGGTGGGAATGGAGGGAAGATTTTCGAGGAAGTGGGTCGTTTGGTGGAGCAGTGTTCTGGTGCTGGGGTTGTGGTGTGTTTTGGGGAGATTGAGCTTTTTGTCGGGGGGAATGAGGGTGTTGCGTTTGTGGTTTCGCAGTTGACGAGGTTGTTGGGTGTTCATGTTGGGAAGGTGTGGTTGGTGGGCGTGGCGGGAACCTCGGAGGCCTATTCTAAGTTCCTGAGGTTGTTCCCTACAGTGGACAAAGATTGGGATCTGCATCTCCTGACCATGACCTCTGCCACCCCTTTCATGGAAGGACTCTACCCCAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGCGGGTTCTTTTCTACAACTTCTGAGTTGAAAAATCCCGTTAGCTGTACGAATGCATCATCTTTAACACGGTGTGACACATGCAATGAAAAGTGTGAACAAGAAGTTGCTGATATTTTGAATGTAGGTCCTGCAACTTCAGCATCTGGTTACTCAACTAGCTTGCCTTGGTTACAAAAGGTTAATGTGGAGACAGATATGGCAAAGACTAATGAAGAAAACACCAGTCTGAATGGGAAGATCTTCGGATTGCAGAGGAAATGGGGTGATATTTGCCAACGTCTTCATCAAAACCGATCATTACCTGAATTTGATATTTCTAAAACAAGGTTCCAAGTTCCTTCCCTTGAGGGTTTTCAATTTGGTCCAGGAAGTAGTAGCAAAGGTCCACCCCATAGCGAAATCCAATATTCTCAAAGTGCATTTCCATTTAAACAGATATTACCAGTTTCAGTACCACCTTTTGACACTGTTACCATCACTGATGAAGCAGATCACATGGCAAAAGTTTCTAAGAGTGATATGCACAGTACTTGGGTTTCTCCTTCCCCTAAGGCCAATTTGAGCCTACTTGATCACACACCATCTTCATCCTTGACTCCAGTGACCACTGATTTGGGATTGGGAACGATATATAAATCAGCCACTCATGAGCCAGACACCCCAAAACTAAGTGATCACAAGAAGCATCTTCACAACCTGCCAGATTCCCTTTCAAGTGATTTTAATCCTATGAATGAGTGTACTTCACACCAAATTGCTAGATCTTCTTCATGCTCCGGGCCAAATCTAGAAGGGCATTTTGAAACAGTAGATTTCAAGTCACTGTACCATCTTCTCACTGAAAAGGTTGGGTGGCAGGATGAGGCCATATATGCTATCAATCAGACTGTGTCACGGTGTAGATCTGGTGCTGGAAAGCGTAGTAGTGGCTCACATGTTAGAGCAGACACATGGCTTGCATTCCTTGGACCTGATAGAGTTGGGAAAAGAAAACTTGCTTCAGCACTGGCTGAGATTTTATTTGGAAACAAACAAAGCCTAATTGCTGTGGATTTGAGCTCTCAAGACAAGTGTTACCAATCAAACTCAGTTTTTGAATTCCAAGATTCATATTGTCATGATGTGCTTATGAGGAAGACAGTTGTGGACTATATTGCTTGGGAATTGAGTAAAAGGCCACACTCAGTTGTTTTTCTTGATAATGTAGATCAAGCAGATTTTCTTGTGCAGAATAGTTTGTTCCAAGCAATAAGAACAGGTAAATTCTCGTACTCGCATGGTAGGGAAATCAGCATCAACAATGCAATATTTATTGTAGCCTCTGGTGTGTTTAAAAAAGGCATTGGCTCTTTGAATATGGAGGAGGATCCTAAGATGTTCCCAGAGGAAAGAATCCTAGAAGCTAAAAGATGTCAAATGCAATTATCACTTGGACATTCTTCCCAGGATGCCAAAAGAAGTGGTTGCACTAATGTGAAGGTTGCTCAAAGAAAAGGGACCTCCAAAACAACAATCCTGAATAAAAGAAAGCTAGTAGAAAGTGGTGATTCTGAAGAGAGAGCATCATGCAAGACACTGAAGCAGGTGATGGAGTCATCAAGGTCCTATCTGGATCTTAACATACCTCTGGAGGAGGTTGAAGTGGACAACAATTGCAGTGATTATGAAAGTGAGTCCTACATAGTTGAAAAAAACCCTGGAGCCTGGTTAAATGACTTGTGTGATCAAGTTGATGAAAGAGTTGTTTTTAAGCCATTCAATTTTGATTCTCTTGCTGAGGAAGTAATAAAAAGCATTGACATACAATTTCAAAAGACGTTTGGGTCAGAATTTGTGCTGGAAATTGAGTATGAGGTGATGACACAGATTCTTGGAGCTGCATGGTTATCTGACAAGAAAAAAGCATTGGAAGATTGGGTTGAACATGTTCTTGGCAGAAGCTTTGGTGAAGCTCAACACAAGTACCACTTTGCAGCAGAATATGTGGTGAAACTGGTTAACTGCGAAAGATTTTTTTTGGAAGATCAATCTCCTGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTGA 3249 0.4691 MPTPVSTARQCLTDEAARALDDAVTVARRRSHAQTTSLHAVSALLSLPSAALRDACARCRSCSYSPRLQFRALELSVGVSLDRLPTIKTAGSTGADGGAGYEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQQQQHQTSLLKVELKHFILSILDDPIVSRVFGEAGFRSYDIKLALLQPPPPSRIFSRLTPPVFLCNLEPVQKTGSRLDENCRRIVEVVTRKSKRNPLLMGVYAKSALKSFIECVEARKGGILPCELNGLSVVSVEKEIGEFLREGGNGGKIFEEVGRLVEQCSGAGVVVCFGEIELFVGGNEGVAFVVSQLTRLLGVHVGKVWLVGVAGTSEAYSKFLRLFPTVDKDWDLHLLTMTSATPFMEGLYPKSSLMGSFVPFGGFFSTTSELKNPVSCTNASSLTRCDTCNEKCEQEVADILNVGPATSASGYSTSLPWLQKVNVETDMAKTNEENTSLNGKIFGLQRKWGDICQRLHQNRSLPEFDISKTRFQVPSLEGFQFGPGSSSKGPPHSEIQYSQSAFPFKQILPVSVPPFDTVTITDEADHMAKVSKSDMHSTWVSPSPKANLSLLDHTPSSSLTPVTTDLGLGTIYKSATHEPDTPKLSDHKKHLHNLPDSLSSDFNPMNECTSHQIARSSSCSGPNLEGHFETVDFKSLYHLLTEKVGWQDEAIYAINQTVSRCRSGAGKRSSGSHVRADTWLAFLGPDRVGKRKLASALAEILFGNKQSLIAVDLSSQDKCYQSNSVFEFQDSYCHDVLMRKTVVDYIAWELSKRPHSVVFLDNVDQADFLVQNSLFQAIRTGKFSYSHGREISINNAIFIVASGVFKKGIGSLNMEEDPKMFPEERILEAKRCQMQLSLGHSSQDAKRSGCTNVKVAQRKGTSKTTILNKRKLVESGDSEERASCKTLKQVMESSRSYLDLNIPLEEVEVDNNCSDYESESYIVEKNPGAWLNDLCDQVDERVVFKPFNFDSLAEEVIKSIDIQFQKTFGSEFVLEIEYEVMTQILGAAWLSDKKKALEDWVEHVLGRSFGEAQHKYHFAAEYVVKLVNCERFFLEDQSPGVCLPARINLN 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00617 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 836 IPR027417 -
Vian6g00617 1082 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1044 - -
Vian6g00617 1082 Pfam AAA domain (Cdc48 subfamily) 713 837 IPR003959 GO:0005524|GO:0016887
Vian6g00617 1082 Gene3D - 10 181 IPR036628 -
Vian6g00617 1082 ProSiteProfiles Clp repeat (R) domain profile. 8 185 IPR004176 -
Vian6g00617 1082 Gene3D - 646 878 IPR027417 -
Vian6g00617 1082 CDD RecA-like_ClpB_Hsp104-like 664 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00617 Vian-Chr6 22676071 22681240 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00617 - - gmx:100776148 1763.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00617 6 22676071 22681240 Vian6g00617 6 22676071 22681240 ECH
Vian6g00617 6 22676071 22681240 Vian2g03010 2 50787712 50792712 ECH
Vian6g00617 6 22676071 22681240 Vian7g01937 7 31106017 31107837 ECH
Vian2g03010 2 50787712 50792712 Vian6g00617 6 22676071 22681240 ECH
Vian3g02633 3 40904810 40908916 Vian6g00617 6 22676071 22681240 ECH
Vian6g00617 6 22676071 22681240 Vian7g01937 7 31106017 31107837 PCT