Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03980 ATGGATTCTAGTACTATTCAAGAATTCATAGAAACATGTAACAATGAAAACACTTGCAACTTCTTGAATAATAACAACAATATAAGCACCACAAATACAACAAGCTTGACAACAATAGCTACTGGAAGCTCTTCTTCATCTGCAGCTTCAACTATAATCAACACACCAAACAGTAGCAGCCGATACGAGAACCAGAAACGCCGCGACTGGAACACTTTTGGTCAGTATCTCAAGAATCATCGTCCTCCTCTTTCCCTCTCTAGGTGCAGCGGTGCACATGTCCTAGAATTTCTCAGATATTTGGATCAATTTGGGAAAACAAAAGTACACACACCAATTTGTCCATTTTATGGGCATCCAAATCCACCAGCACCATGTCCATGTCCTCTAAGACAAGCATGGGGAAGTCTTGATGCACTCATAGGCCGTCTTCGTGCGGCCTTTGAGGAAAATGGAGGAAAACCAGAAACAAACCCATTTGGTGCTCGAGCGGTAAGGCTCTACCTTCGCGAAGTTCGCGATCTTCAATCGAAAGCACGAGGGATTAGCTACGAGAAAAAGAAAAGGAAGCGTCCACCACCACAACAACAACCACTTCCATCACCACAAGGTGCAAGTGCAACTCATTAG 630 0.4365 MDSSTIQEFIETCNNENTCNFLNNNNNISTTNTTSLTTIATGSSSSSAASTIINTPNSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPPQQQPLPSPQGASATH 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03980 209 MobiDBLite consensus disorder prediction 179 209 - -
Trre13g03980 209 ProSiteProfiles ALOG domain profile. 61 188 IPR006936 -
Trre13g03980 209 PANTHER PROTEIN G1-LIKE2 40 196 IPR040222 -
Trre13g03980 209 Pfam ALOG domain 54 174 IPR006936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03980 Trre-Chr13 47952747 47953752 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03980 - - ccaj:109797167 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03980 13 47952747 47953752 Trre13g03980 13 47952747 47953752 ECH
Trre13g03980 13 47952747 47953752 Trre13g05269 13 57816231 57816734 ECH
Trre13g03980 13 47952747 47953752 Trre1g03377 1 30002830 30004990 ECH
Trre1g03377 1 30002830 30004990 Trre13g03980 13 47952747 47953752 ECH
Trre13g03980 13 47952747 47953752 Trre1g01609 1 12295910 12296566 PCT
Trre1g02824 1 23382860 23384050 Trre13g03980 13 47952747 47953752 PCT