Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g05269 ATGGCATTGGTAGCTGAACCAAGAAACCCTAGCAATGGAAGTGATTCAAGTGGTGGCAACAAGATTAACAGATACGAGTGCCAAAAGAGGAGAGACTGGAACACATTCTGTCAGTACCTAAGTAGCCATGAACCATCACTTACTCCAACCATGTGCAATGCTTCACATGTTCTTGATTTCCTTCACTACCTTGATCAATTTGGCAAGACCAAGGTTCACAATCCACCTTGTCCTTTCTATGGGATGCCAAACCCTCCATCTCCTTGTCCTTGTCCTCTCCGCCAGGCATGGGGTAGCCTCGATGCTCTCATCGGTCGTCTCCGTGCCGCTTATGATCAGCAGATTAATGTTGGAGGTAATGGTAACCCTTTTGGTGATGGTGCTGTTAGGTTTTACTTGCGCGAAGTTCGTGATTTTCAATCTATGGCTAGAGGAGTTAGCTACCAAAAGAAGAGGAAGAGACCTAACCGCAACATCGCCGCTCCTGATCAACCATCCTCATGA 504 0.4683 MALVAEPRNPSNGSDSSGGNKINRYECQKRRDWNTFCQYLSSHEPSLTPTMCNASHVLDFLHYLDQFGKTKVHNPPCPFYGMPNPPSPCPCPLRQAWGSLDALIGRLRAAYDQQINVGGNGNPFGDGAVRFYLREVRDFQSMARGVSYQKKRKRPNRNIAAPDQPSS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g05269 167 PANTHER PROTEIN G1-LIKE2 17 156 IPR040222 -
Trre13g05269 167 ProSiteProfiles ALOG domain profile. 24 152 IPR006936 -
Trre13g05269 167 Pfam ALOG domain 20 138 IPR006936 -
Trre13g05269 167 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g05269 167 MobiDBLite consensus disorder prediction 146 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g05269 Trre-Chr13 57816231 57816734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g05269 - - tcc:18600074 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03980 13 47952747 47953752 Trre13g05269 13 57816231 57816734 ECH
Trre1g03377 1 30002830 30004990 Trre13g05269 13 57816231 57816734 ECH
Trre13g05269 13 57816231 57816734 Trre13g05269 13 57816231 57816734 ECH
Trre13g05269 13 57816231 57816734 Trre1g02824 1 23382860 23384050 PCT