Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1222 ATGGATTCAAATATTCAATGCTTCATAAACACTTGTAACTCTGACAACACCTGCAACCTCACCAATACCACCGCCAACTTAACCGCAAGTGCTACCTCTTCCTCACCTGCTTCAACTTCCATCACCACCAGCAGCAGCCGCTACGAGAACCAGAAGCGCCGTGACTGGAACACCTTCGGTCAATACCTCAAGAATCACCGACCCCCTCTCTCCCTCTCCAGGTGCAGCGGTGCACACGTCCTTGAATTTCTAAGCCTTGACGCGCTCATAGGGCGTTTGCGTGCAGCTTTTGAGGAGAATGGAGGGAAGCCTGAGGCGAACCCGTTTGGAGCTCGAGCTGTGAGACTGTACCTTCGTGAGGTTCGTGATCTGCAGTCCAAAGCAAGAGGGATTAGTTATGAGAAGAAGAAACGGAAGCGTCCACCACCTCAGCAACAACCCATGCCACTACCTCATCACCCTCTTCCTCCTCCAGGTGCAAGTGCAACTCATTAG 495 0.5212 MDSNIQCFINTCNSDNTCNLTNTTANLTASATSSSPASTSITTSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPPQQQPMPLPHHPLPPPGASATH 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1222 164 MobiDBLite consensus disorder prediction 127 141 - -
Ssu4g1222 164 Pfam ALOG domain 42 85 IPR006936 -
Ssu4g1222 164 Pfam ALOG domain 85 123 IPR006936 -
Ssu4g1222 164 PANTHER G1-LIKE PROTEIN 85 149 - -
Ssu4g1222 164 PANTHER PROTEIN G1-LIKE2 1 84 IPR040222 -
Ssu4g1222 164 PANTHER G1-LIKE PROTEIN 1 84 - -
Ssu4g1222 164 MobiDBLite consensus disorder prediction 30 47 - -
Ssu4g1222 164 PANTHER PROTEIN G1-LIKE2 85 149 IPR040222 -
Ssu4g1222 164 MobiDBLite consensus disorder prediction 30 49 - -
Ssu4g1222 164 ProSiteProfiles ALOG domain profile. 47 137 IPR006936 -
Ssu4g1222 164 MobiDBLite consensus disorder prediction 143 158 - -
Ssu4g1222 164 MobiDBLite consensus disorder prediction 127 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1222 Ssu-Chr4 19460419 19461322 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1222 - - ccaj:109797167 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1222 4 19460419 19461322 Ssu7g1570 7 32900259 32900810 ECH
Ssu4g1222 4 19460419 19461322 Ssu4g1222 4 19460419 19461322 ECH
Ssu7g2230 7 43972591 43973511 Ssu4g1222 4 19460419 19461322 ECH
Ssu7g1407 7 30264974 30266407 Ssu4g1222 4 19460419 19461322 ECH
Ssu4g1222 4 19460419 19461322 Ssu7g3213 7 76449611 76450213 PCT
Ssu7g2230 7 43972591 43973511 Ssu4g1222 4 19460419 19461322 PCT