Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g2176 ATGACTGTCATGACTCCTGCTCCCATTGACCAGCAGGAGGATGAGGAGATGCTTGTCCCACACACTGATTTGCCGGAGAATAATCACCAACCCATGGAAGTTGTGGCACAACCTGATGCTGCCAACACTGTGGAGAGCCAGCCTGTCGAGGATCCTTCATCGACAAGATTCACATGGAAAATTGACAACTTTTCTAGAATGAATTCGAAGAAGCTCTATTCAGAAATATTTGTTGTTGGTGGATATAAATGGCGTGTACTTATTTTCCCAAAAGGGAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCATCTAATTTGCCCTATGGCTGGAGTAGATACGCACAGTTTAGCTTGGCTGTTATTAATCAAATCCATAATAAATATTCTGTCAGAAAAGACACACAACACCAATTCAATGCGCGAGAAAGTGATTGGGGTTTCACGTCCTTTATGCCACTTGGTGAATTGTATGATCCTACCAGAGGGTATCTTGTGAATGACACTCTTGTAGTTGAAGCCGAGGTTCTTGTCCGTAGAATTGTTGATTACTGGACTTATGATTCAAAAAAAGAGACTGGCTATGTTGGACTTAAGAACCAGGGTGCTACATGTTATATGAATTCTCTACTCCAAACTTTATATCACATTCCTTATTTTCGAAAGGCTGTGTATCACATGCCAACAACAGAGAATGACATGCCCTCTGCAAGCATCCCTTTGGCATTGCAAAGTTTATTCTACAAGCTCCAGTATAGTGACACCAGTGTTGCAACAAAGGAGCTCACTAAATCTTTTGGATGGGACACGTATGATTCTTTCATGCAGCATGATGTTCAAGAACTGAACAGAGTCCTTTCTGAAAAACTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACTATACAGAAGTTATTTGAAGGACATCATATGAACTATATTGAATGCATTAATGTGGACTATAAATCAACTAGAAAGGAGTCGTTTTATGATCTTCAGCTTGATGTGAAAGGCTGTCCTGACGTATATGCTTCCTTTGACAAATATGTTGAAGTTGAACGTCTTGAAGGGGACAACAAATATCATGCCGAACAATATGGCTTGCAGGATGCTAAGAAGGGTGTCCTATTTATTGATTTCCCTCCTGTTCTTCAGCTTCAGCTGAAAAGATTTGAATATGACTTTATGCGGGATACCATGGTAAAGATTAATGACCGTTATGAGTTTCCCATGCAACTCGACCTTGATCGTGAGAATGGAAAATATTTATCACCCGAGGCTGATAGGAATGTCCGCAATCTTTACACACTTCATAGTGTTTTGGTTCACAGCGGTGGTGTACATGGTGGACACTATTACGCTTTTATCCGGCCAACTCTCTCTGAGCAGTGGTATAAATTTGATGACGAGAGGGTAACTAAAGAAGACACTAAACGGGCATTAGAGGAGCAATATGGTGGTGAGGAAGAGCTACCACAGACAAATCCTGGGTTTAACAACACTCCTTTTAAATTCACCAAATATTCAAATGCTTATATGCTGGTGTATATACGTGAAGCTGACAAAGACAAAGTAATATGCAACGTGGATGAGAAAGACATCGCTGAACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAAAAGGAGCACAAAAAGAAAGAAAAGGCGGAGGCTCACCTTTACACTATTATAAAGGTGGCACGAGACGAAGACCTTGGAGAGCAGCTTGGAAAGGATATATATTTTGATCTTGTAGACCATGCCAAAGTGAGGTCTTTCCGTGTTCAAAAACAGATTTCTTTTAACTTTTTTAAGGAAGAGGTTGCTAAAGAGTTTGGCATACCAGTCCAATTCCAGCGCTTTTGGCTATGGGCAAAGCGGCAAAACCATACATACCGTCCAAACCGACCGTTGACACTCATGGAAGAAGCACAATCTGTTGGACAATTGAGAGAGGTATCAAACAAGGTTCCCAATGCAGAATTGAAATTGTTTTTGGAAGTGGAGCTTGGGCTGGATTTACGTCCCATTGCACCACCTGACAAGACAAAGGATGATATATTACTTTTCTTCAAGTTATATGATCCTGAGAAAGAGGAGCTACGTTATGTTGGAAGGCTCTTTGTGAAGAATACTGGTAAGCCATTGGAAATCTTGACAAAGTTAAACAAAATGGCTGGTTATGACCCTGATGAAGAGATTGGACTATATGAGGAAATTAAGTTTGAGCCAAATGTTATGTGTGAACCTATTGATAAGAAATTGACATTTCGAGCTAGCCAGTTAGAAGATGGAGATATTATATGCTTTCAGAAAGCTCCTGCTATATACAATGTGGAACATGTACGCTATCCAGATGTGCCGTCATACCTAGAATATGTGCACAACCGCCAGGTTGTTCACTTTCGATCTCTTGATAAACCCAAGGAAGATGACTTCTGTCTGGAGATGTCAAGGCTATATAAATACGATGATGTAGTGGAGAGAGTGGCTCAACAACTAGGTTTGGATGATCCATCCATAATCAGGCTTACTCCTCACAATTGTTACTCTCAGCAGCCAAAACCTCAGCCGGTTAAGTATCGGGGTGTGGAGCATTTGTCTGAAATGCTGGTTCACTATAATCAGACTTCGGACATATTGTACTATGAAGTACTTGACATCCCTCTGCCAGAATTACAAGGTTTGAAAACTCTGAAAGTTGCATTTCACCATGCTACCAAGGATGAAGTGGTTATTCATACCACCAGACTTCCAAAGCAGAGCACTGTGGGGGATGTCCTTGATGATCTGAAAACAAAGGTGGAATTGTCCGACCCTGAAGCTGAGCTTAGGTTGCTTGAAGTTTTCTATCACAAGATATACAAGGTTTTCCCTCCCAATGAAAAGATTGAAAACATTAATGATCAATACTGGACTTTACGTGCAGAGGAGATTCCAGAAGAGGAGAAAAATCTGGGTCCTCATGATCGCCTAATCCATGTGTATCATTTCACTAAAGATACGGCTCAGAACCAAATGCAAATTCAGAACTTTGGGGAACCATTTTTCTTGGTCATACATGAAGGGGAGACTTTGACAGAAATTAAAGTTCGAATACAAAAGAAACTTCAAGTTCCTGATGATGAGTTTGCAAAGTGGAAATTTGCTTTTTTTTCTTTAGGGCGTCCTGAGTACCTTCAGGATTCTGACATTGTATCCAGTCGTTTTCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAGTATCTTGGCTTGGAGCATACTGATAATGCTCCAAAAAGATCATATGCTGTCAACCAGAATCGCCATACATTTGAGAAGCCAGTAAAGATTTATAATTAG 3357 0.4054 MTVMTPAPIDQQEDEEMLVPHTDLPENNHQPMEVVAQPDAANTVESQPVEDPSSTRFTWKIDNFSRMNSKKLYSEIFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSSNLPYGWSRYAQFSLAVINQIHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPTRGYLVNDTLVVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSASIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCPDVYASFDKYVEVERLEGDNKYHAEQYGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPMQLDLDRENGKYLSPEADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDTKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIREADKDKVICNVDEKDIAEHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLGEQLGKDIYFDLVDHAKVRSFRVQKQISFNFFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTLMEEAQSVGQLREVSNKVPNAELKLFLEVELGLDLRPIAPPDKTKDDILLFFKLYDPEKEELRYVGRLFVKNTGKPLEILTKLNKMAGYDPDEEIGLYEEIKFEPNVMCEPIDKKLTFRASQLEDGDIICFQKAPAIYNVEHVRYPDVPSYLEYVHNRQVVHFRSLDKPKEDDFCLEMSRLYKYDDVVERVAQQLGLDDPSIIRLTPHNCYSQQPKPQPVKYRGVEHLSEMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVVIHTTRLPKQSTVGDVLDDLKTKVELSDPEAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKDTAQNQMQIQNFGEPFFLVIHEGETLTEIKVRIQKKLQVPDDEFAKWKFAFFSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g2176 1118 CDD MATH 56 179 IPR002083 GO:0005515
Pvu8g2176 1118 Pfam Ubiquitin-specific protease C-terminal 886 1096 IPR029346 -
Pvu8g2176 1118 Gene3D - 802 899 - -
Pvu8g2176 1118 SUPERFAMILY Cysteine proteinases 194 551 IPR038765 -
Pvu8g2176 1118 ProSiteProfiles MATH/TRAF domain profile. 54 179 IPR002083 GO:0005515
Pvu8g2176 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 439 456 IPR018200 GO:0004843|GO:0006511
Pvu8g2176 1118 SUPERFAMILY TRAF domain-like 53 184 - -
Pvu8g2176 1118 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 199 523 IPR028889 -
Pvu8g2176 1118 Pfam Ubiquitin carboxyl-terminal hydrolase 199 520 IPR001394 GO:0004843|GO:0016579
Pvu8g2176 1118 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 52 195 IPR008974 GO:0005515
Pvu8g2176 1118 Pfam MATH domain 61 180 IPR002083 GO:0005515
Pvu8g2176 1118 SMART math_3 56 160 IPR002083 GO:0005515
Pvu8g2176 1118 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 1043 - -
Pvu8g2176 1118 Gene3D - 684 801 - -
Pvu8g2176 1118 Coils Coil 532 563 - -
Pvu8g2176 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 200 215 IPR018200 GO:0004843|GO:0006511
Pvu8g2176 1118 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN 4 1043 - -
Pvu8g2176 1118 CDD peptidase_C19C 197 523 - -
Pvu8g2176 1118 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 624 876 IPR024729 -
Pvu8g2176 1118 Gene3D Cysteine proteinases 196 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g2176 Pvu-Chr8 52205099 52217494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g2176 185 570 Miscellaneous Gene Families AT4G31670 23.114 2.04e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g2176 K11838 - gmx:100778442 2161.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2176 8 52205099 52217494 Pvu8g2176 8 52205099 52217494 ECH
Pvu1g2071 1 46538820 46540841 Pvu8g2176 8 52205099 52217494 ECH
Pvu7g2726 7 50224160 50227523 Pvu8g2176 8 52205099 52217494 ECH
Pvu6g0072 6 3380719 3402390 Pvu8g2176 8 52205099 52217494 PCT
Pvu8g2176 8 52205099 52217494 Pvu6g0071 6 3369764 3372969 PCT