Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0071 ATGACGGTGATGATGCCAGCACCCATTGATCAGCAAGAGGACGAGGAGGTGCTCGTGCCGCACACGGATTTGCCTGAGAACAATCATCAACCTATGGAAGTTGTAGCTCAACCTGAAACTGCCAATGCTGTGGAGAGTCAGCCTGTTGAGGATCCTCCATCGTCTAGATTCACATGGAGAATTGAAAACTTTTCGAGGCTGAATACAAAGAAGCTCTATTCAGAACAATTTGTTGTTGGTGGCTATAAATGGCGGGTGCTTATTTTCCCAAAAGGAAACAATGTGGACTATTTGTCCATGTATTTGGATGTTGCAGATTCAGCTAGTTTGCCCTATGGTTGGAGTAGATATGCACAGTTTAGCTTGGCAGTTGTTAATCAAATCCATAATAAGTATTCTGTGAGAAAAGACACACAGCATCAATTTAATGCACGTGAAAGTGATTGGGGTTTCACGTCCTTCATGCCTCTTGGTGAATTGTATGATCCTAGTAGAGGGTATCTTGTGAATGATACTCTTATAGTTGAAGCTGAGGTTCTTGTTCGTAGGATTGTTGATTACTGGACTTATGATTCAAAGAAGGAGACTGGCTATGTCGGGCTTAAGAACCAAGGAGCTACCTGTTATATGAATTCTCTACTCCAAACCTTGTACCATATTCCTTATTTTAGAAAGGCTGTGTACCATATGCCAACAACTGAAAATGATATGCCCTCTGGTAGCATCCCTTTGGCTTTACAAAGTTTATTCTACAAGCTTCAATACAGTGACACCAGTGTTGCGACGAAGGAGCTGACAAAGTCTTTTGGATGGGATACATATGATTCTTTCATGCAGCATGATGTTCAAGAACTAAATCGGGTTCTCTGTGAAAAGCTTGAAGACAAAATGAAGGGAACTGTTGTTGAGGGAACCATACAAAAATTATTTGAAGGGCACCATATGAATTACATAGAATGCATCAATGTAGACTACAAATCAACTAGAAAAGAGTCATTTTATGACCTTCAGCTTGATGTCAAAGGTTGTCGTGATGTTTATGCTTCCTTTGATAAGTATGTTGAAGTTGAAAGACTTGAGGGGGATAACAAATATCATGCTGAACAGTATGGTTTGCAGGTTAGTTGCTATTCATAA 1137 0.4019 MTVMMPAPIDQQEDEEVLVPHTDLPENNHQPMEVVAQPETANAVESQPVEDPPSSRFTWRIENFSRLNTKKLYSEQFVVGGYKWRVLIFPKGNNVDYLSMYLDVADSASLPYGWSRYAQFSLAVVNQIHNKYSVRKDTQHQFNARESDWGFTSFMPLGELYDPSRGYLVNDTLIVEAEVLVRRIVDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYGLQVSCYS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0071 378 CDD MATH 56 179 IPR002083 GO:0005515
Pvu6g0071 378 SUPERFAMILY TRAF domain-like 52 184 - -
Pvu6g0071 378 SUPERFAMILY Cysteine proteinases 194 374 IPR038765 -
Pvu6g0071 378 Gene3D Cysteine proteinases 196 377 - -
Pvu6g0071 378 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 53 195 IPR008974 GO:0005515
Pvu6g0071 378 SMART math_3 56 160 IPR002083 GO:0005515
Pvu6g0071 378 Pfam MATH domain 61 180 IPR002083 GO:0005515
Pvu6g0071 378 ProSiteProfiles MATH/TRAF domain profile. 54 179 IPR002083 GO:0005515
Pvu6g0071 378 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 199 378 IPR028889 -
Pvu6g0071 378 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 372 - -
Pvu6g0071 378 Pfam Ubiquitin carboxyl-terminal hydrolase 199 326 IPR001394 GO:0004843|GO:0016579
Pvu6g0071 378 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 200 215 IPR018200 GO:0004843|GO:0006511
Pvu6g0071 378 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE-LIKE PROTEIN 4 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0071 Pvu-Chr6 3369764 3372969 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0071 K11838 - gmx:100781560 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g2176 8 52205099 52217494 Pvu6g0071 6 3369764 3372969 PCT