Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0072 ATGGTGGATTTTCTAACCACTGCCACAACAAGGCGGTGGCGATGCAGATTTTCGATGGTGGCCCATGGCGGCCGCTTTTGCCATCTCGGAGTGGATGCTAAGAAGGGTGTCCTATTTGTTGAATTTCCTCCTGTTCTTCAACTTCAGCTAAAAAGATTTGAATATGACTTTATGCGGGATACTATGGTTAAGATTAATGACCGTTATGAGTTTCCCTTGCAACTTGATCTTGACCGTGATGATGGAAAATATCTTTCACCTGATGCTGATAGGACTGTCCGCAATCTTTATACACTTCACAGTGTTTTGGTTCACAGTGGAGGTGTGCATGGCGGACATTATTATGCTTTTATCAGGCCAACCCTCTCTGAACAGTGGTATAAATTTGACGATGAGAGGGTGACAAAAGAAGATAATAAAAGAGCATTAGAGGAGCAATATGGTGGTGAGGAAGAGTTACCACAGGCAACTCCTGGGTTCAATAACACTCCATTTAAGTTCACCAAATACTCAAATGCTTATATGTTGGTGTATATTCGTGAAAGTGACAAGGACAAAATCATATGCAATGTGGATGAGAAAGACATTGCAGCACATTTAAGGGAGAGGTTGAAGAAAGAACAAGAAGAGAAAGAGCACAAAAAGAAAGAAAAGGCAGAAGCTCACCTTTATACTATTATAAAGGTGGCACGAGATGAAGACCTGAAAGTGCAGATTGGAAAGGCTATATACTTTGATCTTGTAGACCATGACAAAGTTCGTAGTTTCAGAGTCCAAAAGCAGACATCTTTTAATCTTTTCAAGGAAGAGGTTGCAAAAGAATTTGATGTTCCAGTTCAATTTCAGCGGTATTGGATATGGGCAAAGCGGCAAAACCATACTTATCGTCCCAACAGACCATTGACACCTGCTGAGGAAGCACAATCTGTTGGACAATTGAGAGAAGTATCAAACAAGGTTCACAATGCAGAATTAAAATTGTTTTTGGAAGTGGAGATGGGGATGGATTCTCGTCCCATCGCACCACCTGAAAAGACCAAGGATGATCTATTACTTTTCTTCAAGCTGTATGATCCTGAAAAAGAGGAGCTGCGTTATGTTGGAAGGATCTTTGTGAAGTGTACTGGAAAGCCATTGGAAATCTTAACGAGGTTAAATGAAATGGCTGGTTATGACCCTGAAGAAGATATTGCACTTTATGAGGAAATTAAGTTTGAACCAAATGTCATGTGCGAACCTATTGACAAGAAAGTAACCTTTCGAACTAGCCAGCTGGAAGATGGTGATATCATATGCTTTCAGAAGGCTTCCTCTATGGATATTGGGGACAATGTCCGTTATCCAGATGTGCCCTCATATTTAGAATATGTGCACAATCGCCAGGTGGTTCACTTTCGATCTCTCGAGAGACCTAAAGAAGATGACTTTTTCTTGGAGATGTCAAGGCTTTTTACCTATGATGATGTAGTCGAGAGAGTAGCCCAACAACTTGGTTTGGATGATCCGTCCAAAATACGGCTGACACCACACAACTGCTACTCTCAACAACCAAAACCCCAGCCCATTAAATATCGAGGGGTAGAACATTTGTCTGATATGTTAGTTCATTACAATCAGACGTCAGATATATTGTACTATGAAGTACTTGACATCCCTCTACCAGAATTACAAGGTTTGAAAACTCTGAAAGTTGCATTTCATCATGCCATTAAAGATGAAGTGGTTATTCATACTATCCGACTCCCAAAGCAGAGCACTGTTGGGGATGTCCTGGATGATCTTAAAACAAAGGTAGAGTTATCTGATCCTAAAGCGGAACTTAGGTTGCTTGAAGTCTTCTATCACAAAATATACAAGGTCTTTCCTCCCAATGAAAAGATTGAAAACATTAATGATCAGTACTGGACATTACGAGCAGAGGAGATTCCAGATGAAGAGAAAAGCCTTGGTCCTCATGATCGTCTAATTCACGTGTACCATTTCAATAAAGACACAGCTCAAAACCAAATGCAAATTCAGAACTTTGGGGAACCTTTTTTTCTGGTTATACATGAAGGAGAAACTCTATCTGAAATTAAGGTGCGAATACAAAAGAAACTTCAAGTTCCTGATGATGAGTTTGGCAAGTGGAAGTTTGCATTTCTATCACTAGGGCGTCCGGAGTACCTTCAAGATTCTGACATTGTATCCAGTCGTTTTCAGAGAAGAGATGTTTATGGTGCTTGGGAGCAATATCTTGGCTTGGAGCATACTGACAATGCTCCTAAAAGATCATATGCTGTCAACCAGAATCGCCACACTTTTGAGAAGCCAGTAAAGATTTATAATTAA 2331 0.4033 MVDFLTTATTRRWRCRFSMVAHGGRFCHLGVDAKKGVLFVEFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDDGKYLSPDADRTVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYKFDDERVTKEDNKRALEEQYGGEEELPQATPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAAHLRERLKKEQEEKEHKKKEKAEAHLYTIIKVARDEDLKVQIGKAIYFDLVDHDKVRSFRVQKQTSFNLFKEEVAKEFDVPVQFQRYWIWAKRQNHTYRPNRPLTPAEEAQSVGQLREVSNKVHNAELKLFLEVEMGMDSRPIAPPEKTKDDLLLFFKLYDPEKEELRYVGRIFVKCTGKPLEILTRLNEMAGYDPEEDIALYEEIKFEPNVMCEPIDKKVTFRTSQLEDGDIICFQKASSMDIGDNVRYPDVPSYLEYVHNRQVVHFRSLERPKEDDFFLEMSRLFTYDDVVERVAQQLGLDDPSKIRLTPHNCYSQQPKPQPIKYRGVEHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHAIKDEVVIHTIRLPKQSTVGDVLDDLKTKVELSDPKAELRLLEVFYHKIYKVFPPNEKIENINDQYWTLRAEEIPDEEKSLGPHDRLIHVYHFNKDTAQNQMQIQNFGEPFFLVIHEGETLSEIKVRIQKKLQVPDDEFGKWKFAFLSLGRPEYLQDSDIVSSRFQRRDVYGAWEQYLGLEHTDNAPKRSYAVNQNRHTFEKPVKIYN* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0072 776 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 30 703 - -
Pvu6g0072 776 Coils Coil 190 221 - -
Pvu6g0072 776 Gene3D - 460 557 - -
Pvu6g0072 776 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 181 IPR028889 -
Pvu6g0072 776 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 97 114 IPR018200 GO:0004843|GO:0006511
Pvu6g0072 776 Pfam Ubiquitin-specific protease C-terminal 544 754 IPR029346 -
Pvu6g0072 776 Pfam ICP0-binding domain of Ubiquitin-specific protease 7 282 534 IPR024729 -
Pvu6g0072 776 SUPERFAMILY Cysteine proteinases 27 209 IPR038765 -
Pvu6g0072 776 Gene3D - 342 459 - -
Pvu6g0072 776 Gene3D Cysteine proteinases 7 182 - -
Pvu6g0072 776 Pfam Ubiquitin carboxyl-terminal hydrolase 37 178 IPR001394 GO:0004843|GO:0016579
Pvu6g0072 776 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 13-LIKE ISOFORM X1 30 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0072 Pvu-Chr6 3380719 3402390 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0072 K11838 - gmx:100781560 1414.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0072 6 3380719 3402390 Pvu8g2176 8 52205099 52217494 PCT