Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2071 ATGTCGCTAGCCACTAGAATGGACAAACAGAAGGGAACTGGTATTGATTTTGAGACATTCACGTGGAAGATTGAAAACTTCTCAAAACAGAACAGGAAGAAACTACAATCCAAGGCCTTCCGAATTCAAGGTTATAAATGGCGTATTCGTTTGTATCCATTAATGAAAAATGTTGATCATTTCTCGTTATATTTGATGGTTGCGGATTCTTTACCACCTTACGGATGGAGCAGAGATGCATATTTTAAGTTGTCTCTGCTTAATCAATTGGATGGCGATAAGTCAGTTGTAAAGGAGACTCGGCAGAAGTTCAATGGTGGATATCGTAGCTGGGGTTCATTTTTCGTGAACCTAAGTGTCTTCCATGACTCAAAGCAAGGCTATCTTGTGAATGACACATGCATCATTGAAGCTCGTCTCTGTGTCTCTGATCTTAGTACTGTTGAAGCTAACAATTTGAACGCAGTCACTCCAATTAGCTACGCTATGTCGGGTGATCAAGCAAGAAGAAATTCAGAATCCACACAGAAGGAAGATGATAAAGAAACAGAAACAGAAACATCAGATGAGAGTGAGACACATAGTTGGAGCCCCTGTGGGTCTAGTCAAACAGAAGGGGAAGTTCAAAGTTTAGATTTGACACTAAAAGACCTTCTAGATTTGGGGAGTTTAGGGAAAGAAGAAGCAGCTTTTGTTCCACTGTTGGAAGAGGCATGCATATGGCATCCTTCCCTGATAAGGAGCCAGAGGAAAAGTTCTAGATGGTTCAAACTATGGGCATTCACATCATTAGGTCAGGTTCTACATTTACTCAAGACAAGTAAAGCGAAGGATATGAATGAAGATGCATGCAATCGCCTTCATGGTTTATGGGAGGAACTTGTTAAACATTCTGGATTTCAGTTGTCTTGGTTGGAGCCTTATGTTGAATCTGCATTGGGTATGAAAGCTCATTTGGAAAAAACAGAAGAGGTGAACAAACTGAAAGACAGTGTGGTTGCTTTGGAGATCAAAATGAAGAAGCTGAGGGGAGAATTGGAAGCTGCAGAAGCTGAGTTTGAGGTAACAAGGAGGGCCTTGGTTGAGGCCAAAAAAGGTTTCATAGAGTTGGATTTTAATGCTGTATTAGGTTATGCTATGTTTTAG 1146 0.4066 MSLATRMDKQKGTGIDFETFTWKIENFSKQNRKKLQSKAFRIQGYKWRIRLYPLMKNVDHFSLYLMVADSLPPYGWSRDAYFKLSLLNQLDGDKSVVKETRQKFNGGYRSWGSFFVNLSVFHDSKQGYLVNDTCIIEARLCVSDLSTVEANNLNAVTPISYAMSGDQARRNSESTQKEDDKETETETSDESETHSWSPCGSSQTEGEVQSLDLTLKDLLDLGSLGKEEAAFVPLLEEACIWHPSLIRSQRKSSRWFKLWAFTSLGQVLHLLKTSKAKDMNEDACNRLHGLWEELVKHSGFQLSWLEPYVESALGMKAHLEKTEEVNKLKDSVVALEIKMKKLRGELEAAEAEFEVTRRALVEAKKGFIELDFNAVLGYAMF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2071 381 MobiDBLite consensus disorder prediction 171 191 - -
Pvu1g2071 381 ProSiteProfiles MATH/TRAF domain profile. 17 140 IPR002083 GO:0005515
Pvu1g2071 381 Coils Coil 325 366 - -
Pvu1g2071 381 SUPERFAMILY TRAF domain-like 19 143 - -
Pvu1g2071 381 MobiDBLite consensus disorder prediction 164 205 - -
Pvu1g2071 381 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 17 164 IPR008974 GO:0005515
Pvu1g2071 381 Pfam MATH domain 24 140 IPR002083 GO:0005515
Pvu1g2071 381 CDD MATH 19 140 IPR002083 GO:0005515
Pvu1g2071 381 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 17 362 - -
Pvu1g2071 381 SMART math_3 19 121 IPR002083 GO:0005515
Pvu1g2071 381 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 17 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2071 Pvu-Chr1 46538820 46540841 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2071 - - gmx:102664376 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2071 1 46538820 46540841 Pvu7g2407 7 47411861 47442022 ECH
Pvu1g2071 1 46538820 46540841 Pvu1g2071 1 46538820 46540841 ECH
Pvu1g2071 1 46538820 46540841 Pvu8g2176 8 52205099 52217494 ECH
Pvu1g2071 1 46538820 46540841 Pvu7g2407 7 47411861 47442022 PCT
Pvu7g2725 7 50215174 50217244 Pvu1g2071 1 46538820 46540841 PCT