Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu7g2771 ATGAGAACAGGAAGCTGCGCCGTGCAACAGGGTCTAACCCAGGAAGCTGCAACCATAGTGAAGCAAGCAGTAACACTCGCCAAGCGTCGTGGGCACGCGCAAGTCACGCCTCTCCACGTGGCACACACCATGCTCTCCATCACCAACGGCCTTCTCAGAACCGCGTGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCTTTGGAGCTCTGCTTCAACGTGGCGCTCAACCGGTTACCGGCTTCAACCGCCTCCAGCCCCATGTTGCAAGGCTCCCACCACCACCACTCTCACGCCTGTCCCTCCATCTCAAACGCTCTGGTTGCCGCGTTCAAACGCGCTCAAGCGCACCAGCGACGTGGATCCATCGAGAATCAACAGCAACCTCTTCTGGCAGTGAAGATAGAACTGGAGCAACTCATTATTTCGATCTTGGATGACCCCAGTGTGAGCCGCGTCATGAGGGAGGCTGGGTTCTCCAGCACTCAAGTGAAAAGCAACGTTGAGCAAGCGGTTTCTCTGGAAATATGCTCTCAGAATAATGGTAGTGATAACAGTAATGCTAAGGCAAAGGAAGAGAGTAGTAGTGGAGAGAAAGAGAAAGAGAAAGAGAAAGGGTTGGTGTTGGATCCCATTAGGGGTGAGGATGTTGCTAGTGTGATTGAGAATCTGGGGAGTGAGAGAAAGAGAAGTGTTGTGATAGTGGGAGAGTGTGTGAGTAGTTTGGAGAGTGTGGTTAGAGGAGTGATGGAAAAGGTTGATAAAGGGGATGGTGGTGAGAGTCTGAGGGGTGTGAAGTTTCTCCCTCTTTCACTTTCTTCTTTTGGGAGTGTTTCGAGAGTTGAAGTTGAGGAAAAGGTTGAAGAGATTAGGAGGGTTGTGAAGGGAAGTGAAGATGGGAAAGGGTATGTTTTGTACTTGGGAGATCTTAAATGGGTGTTGGATTATAGAGGTGGTGGATCACAAGGGAGAGGGTGTTATTGTGGTGTGGAGCACATGGTGATGGAGATTGGGAAGCTTGTGAGTGAGGTTGAAGAGAATGGTGGAAGGTTTTGGTTGATGGCTGTTGCCACTTTTCAAGCTTACATGAGATGCAAAATTGGGCAGCCATCGTTGGAGACTCTTTGGGATCTTCATCCCATTACTGTCCCTGCCGGAACCTTGCGCTTGAGTCTCATCACTGACAGTGGTCAACAAAATGAGCCCATAAACAAGAAAGCTGACAACAGAACTAGCTGGCTCTTACTGGAAGGAGTGGGGGATGATGAGAAACAACAACCTTGCTTCGCAGAACCTTCCACCAAGAATGAGACCGAAATTCGAAGCTTCCAAAGCAGTACTTGTAATAGTGACTCCTCAACTTCAACCCTCCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCTACAATGATCAGAACTGTGTCCCAGTGGGAGAGCTATGCAAAAAGTGGAACTCTATGTGCAGTTCAATCCAAAAGCAACCTTATTCTTGTGACAAAACCCTCACACTGTCCTCAGTATCACCCTCTTCCTCAACCTCAGGCTTCTCATACGAACAACAACATTCTAATCAAGAGTGGCAAGGAGCTTCACCCAAAGATTTATTGAACAACCACCATTTCTGGATCTCAAACAACGGTTGCAGCAACCCCAACGAACCCACTTTGCGAGTGTACATTCCAGAGAGCAAGGACGCCACCACAACGCAACCCTTCTCATCTCCCAACCCTAATTCCGCTTCTTCCAGTGACGTCATGGAAGTGGAGCACGTGAGCAGGTTCAAGGAGTTCAACTCGGAGAACATGAAAACACTCTGCAATGCCTTGGAGAAAAAGGTGACGTGGCAGAAGGATATAATACCAGAAATCGCCACCACCGTTTTGCAGTGCCGTTCTGGCACGGTGAGGAGAAAAGGAAAAGCGAGAAACGGCGAAGAACTGAAAGAAGACACGTGGCTGGTGTTCCAAGGTGTTGACGTCGAAGCAAAAGAGAAAATAACACGAGAATTGGCTCGTCTCGTTTTCGGGTCCCGCAACGACGTGGTTTCCATAGCGTTGAGTAGTTTCGCGTCAACGAGAGCAGATTCAAGCGATGATTATAGCAGGAAGAAAAGATGGAGAGAAGAAAGAAGTTGCAGTTACATTGAGAGGTTCGCAGAAGCAGTGATGAAGAACCCTCACAGAGTGTTTGTTGTTGAAGATATAGAGCAAGCGGATTATTGTTCTCAACTTGGTTTCAAAAGGGCCATGGAGAGAGGAAGAGTTAAGGATTCAAACGGTGAAGAGATTGCACTTTGCGACGCAATCATCATTCTCAGCTGTGAAAGTTTCAGTTCAAGGTCAAGAACTTGTTCTCCTTCGGTCAAACAAAGATCGTTTACCGAGGAAGAACACAATGGTGACATTGGTGCTTTGGATTTGAATATTTCCATTGATGATGAGAACGAGGTTGAGGATCGATCGGTGGATGAAATTGGGCTTCTTGAATTCGTGGACAGAAAGATTATGTTCAACTTTCAGGAATTGTGA 2544 0.4764 MRTGSCAVQQGLTQEAATIVKQAVTLAKRRGHAQVTPLHVAHTMLSITNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTASSPMLQGSHHHHSHACPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQNNGSDNSNAKAKEESSSGEKEKEKEKGLVLDPIRGEDVASVIENLGSERKRSVVIVGECVSSLESVVRGVMEKVDKGDGGESLRGVKFLPLSLSSFGSVSRVEVEEKVEEIRRVVKGSEDGKGYVLYLGDLKWVLDYRGGGSQGRGCYCGVEHMVMEIGKLVSEVEENGGRFWLMAVATFQAYMRCKIGQPSLETLWDLHPITVPAGTLRLSLITDSGQQNEPINKKADNRTSWLLLEGVGDDEKQQPCFAEPSTKNETEIRSFQSSTCNSDSSTSTLPAWLQQYKNENKGITYNDQNCVPVGELCKKWNSMCSSIQKQPYSCDKTLTLSSVSPSSSTSGFSYEQQHSNQEWQGASPKDLLNNHHFWISNNGCSNPNEPTLRVYIPESKDATTTQPFSSPNPNSASSSDVMEVEHVSRFKEFNSENMKTLCNALEKKVTWQKDIIPEIATTVLQCRSGTVRRKGKARNGEELKEDTWLVFQGVDVEAKEKITRELARLVFGSRNDVVSIALSSFASTRADSSDDYSRKKRWREERSCSYIERFAEAVMKNPHRVFVVEDIEQADYCSQLGFKRAMERGRVKDSNGEEIALCDAIIILSCESFSSRSRTCSPSVKQRSFTEEEHNGDIGALDLNISIDDENEVEDRSVDEIGLLEFVDRKIMFNFQEL* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu7g2771 847 Pfam Clp amino terminal domain, pathogenicity island component 23 53 IPR004176 -
Pvu7g2771 847 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Pvu7g2771 847 PANTHER PROTEIN SMAX1-LIKE 3 1 846 - -
Pvu7g2771 847 Gene3D - 201 384 IPR027417 -
Pvu7g2771 847 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 846 - -
Pvu7g2771 847 MobiDBLite consensus disorder prediction 570 589 - -
Pvu7g2771 847 Gene3D - 585 830 IPR027417 -
Pvu7g2771 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 781 IPR027417 -
Pvu7g2771 847 MobiDBLite consensus disorder prediction 192 207 - -
Pvu7g2771 847 MobiDBLite consensus disorder prediction 178 207 - -
Pvu7g2771 847 Gene3D - 9 174 IPR036628 -
Pvu7g2771 847 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Pvu7g2771 847 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu7g2771 Pvu-Chr7 50730076 50734392 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu7g2771 - - var:108320189 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu7g2771 7 50730076 50734392 Pvu1g2521 1 50331097 50336473 ECH
Pvu7g2771 7 50730076 50734392 Pvu8g2313 8 53685811 53691299 ECH
Pvu7g2771 7 50730076 50734392 Pvu7g2771 7 50730076 50734392 ECH
Pvu7g2771 7 50730076 50734392 Pvu6g0717 6 18741384 18748029 ECH
Pvu7g2771 7 50730076 50734392 Pvu8g2697 8 57362866 57368759 ECH