Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0717 ATGCCGACGCCGGTAAGCACCGCGAGGCAGTGTTTGACGGACGAGGCGGCGCGTGCGCTCGACGATGCCGTCACGGTTGCCCGCCGCCGCAGCCACGCCCAGACCACCTCCCTCCACGCCGTCTCCGCGCTCCTCTCGCTCCCCTCCGCAACGCTTCGCGACGCCTGCGCTCGCTGCCGGAGTTGCTCCTACTCCCCCCGTCTCCAGTTCCGCGCCCTCGAGCTCTCCGTCGGCGTCTCCCTCGACCGCCTCCCCACAACAAAAACTGCCGGCGGGTCGGACGGCGGTTCTGGCGACGAGGGTCCCCCTGTCTCGAACTCCCTCATGGCCGCCATAAAGCGCTCCCAGGCAAACCAGCGGCGCCACCCGGATAGCTTCCACCTTATGCAGATGATGCAGCAACAGCAGCATCAAACGACGTCGTTGCTGAAAGTCGAACTCAAGCACTTCATTCTCTCTATTCTCGACGACCCTATCGTGAGTCGTGTCTTCGGCGAAGCCGGTTTCAGAAGCTACGACATCAAGCTCGCGCTTCTTCAACCACCTCCACCTTCAAGAATCTTCTCGCGGTTAACCCCTCCGGTTTTCCTCTGCAACCTCGAACCGGTACAGAAGACCGGTTCGCGGCTTGACGAGAATTGCCGCAGAATCGTGGAGGTAGTGACGAGGAAGAGCAAAAGGAACCCTCTTTTGATGGGGATGTACGCGAAAACCGCTCTGAAGAGCTTCATCGAATGCGTGGAAAGTCGTAAAGGTGGGGTCTTGCCCTGTGAGCTGAATGGGTTGAGTGTAGTTTCGGTGGAGAAGGAGATTGGGGAGTTCTTGAGGGAAGGTGGGAGCGGAGGGAAGATTTTCGAGGATGTGGGTCGTTTGGTGGAGCAGTGTTCTGGTGCTGGGGTTGTTGTGTGTTTTGGGGAGATTGAGCTTTTTGTCGGGGGGAATGAGGAGGGTGTTGGTTTTGTGGTTTCGCAGTTGACGAGGTTGTTGGGTGTTCATCTTGGGAAGGTGTGGTTGGTGGGCGTGGCGGGAACCTCGGAGGCCTATTCTAAGTTCCTGAGGTTGTTCCCTACAGTGGACAAGGATTGGGATCTGCATCTCCTGACCATGACCTCTGCCACCCCTTTCATGGAAGGACTCTACCCCAAGTCCAGCTTGATGGGGTCCTTTGTGCCATTTGGTGGGTTCTTTTCTACACCTTCTGAGTTGAAAAATCCTGTTAGCTGTAGGAATGCATCATCTTTAACACGGTGTGACACATGCAATGAAAAGTGTGAACAAGAAGTTGCTGATATTTTGAGGGTAGGCCCTGCTACTTCAGCATCTGGTTACTCAACGAGCTTGCCTTGGTTACAAAAGGTGAATGTGGAGACAGATAGAGGATTGGATGTGGCAAAGACTAATGAAGAAAACTCAAGTTTGAATGGGAAGATCTTAGGATTGCAAAGGAAATGGAGTGATATTTGTCAACGTCTTCATCAAAACCGATCATTACCCGAGTTTGATATTTCTAGAACAAGGTTCCAAGTTCCTTCCCTTGAGGGGTTTCAATTTGGTCCAGGGTGTAGTAGCAAAGGTCCATCCCATAGTGAAATCCAATATTCTAAAATTTCTTGCATGTCTATTGAGTCGCAAAATGCATTTCCATTTAAACAGATATTACCAGTTTCAGTACCTTTTGACACTGTTAGCATCACTGATGAAGCAGATCACATAGCAAAAGTTTCTAAGAGTGATATGCATAGTACTTGGGTTTCTCCTTCCCCTAAGGCCAATTTGAGCCTACTTGATCACACATCATCTTCATCCTTGACTCCTGTGACCACTGATTTGGGATTGGGAACTATATATAAATCAGCCACTCATGAGCCAGACACCCCAAAACTAAGTGATCACAAGAAGCATCTTCACAACTTGCCAGATTCCCTTTCAAGTGATTTTAATCCTAAGAATGAGTGTAGTTCACACCAAATTGCTAGATCTTCTTCATGCTCGGGTCCAAATCTAGAAGGCAATTTTGAAACGGTGGATTTCAAGTCACTGTACCATCTTCTCACTGAAAAGGTTGGGTGGCAGGATGAGGCCATATATGCTATCAATCAAACTGTGTCGCGTTGTAGATCTGGTGCTGGAAAGCGTAGTAGTGGCTCACATGTTAGAGCAGACATATGGCTTGCATTCCTTGGACCTGATAGACTTGGGAAAAGAAAACTTGCTTCAGCACTTGCTGAGATTTTATTTGGAAACAAACAAAGCTTGATCACTGTGGATTTGAGCTCTCAAGACAAGTGTTACCCATCAAACTCGATTTTTGAATTCCAAGATTCTTATTGTCATGATGTGCTTATGAGGAAGACAGTTGTGGACTATATTGCTTGGGAGTTGAGTAAAAAGCCACATTCAGTTGTCTTCATTGATAATGTAGATCAAGCAGATTTTGTAGTGCAGAATAGTTTGTTCCAAGCAATAAGAACAGGTAAATTCTCGTACTCGCATGGAAGGGAAATCAGCATCAACAATGCAATATTTATTGTAACCTCTAGTGTGTTTAAAGGCAGTGGCTCTTTGAATTTGGAGGAGGATCCTAAGATGTTCCAAGAGGAAAGAATCCTAGAAGCTAAAAGGTGTCAAATGCAATTATCACTAGGAGATTCTTCCCAGGATGTCTCCAAAAGGAGTGGTTGCACTAGTGTGAAGGTTGCTCAAAGAAAAGGGACCTCCAAAACAACAATACTGAATAAAAGAAAGCTAGTAGAAAGTGGTGATTCTGCAGAGAAAGCATCATGCAAGACACTGAAGCAGGTCATGGAGGCATCGAGGTCCTATCTGGATCTTAACATGCCTCTGGAGGAGGTTGAAGAGGACAACAATTACAATGACTACGAAACTGAATCCATAGTTGAAAACTGTGGATCCTGGTTAAATGACTTGTGTGATCAAGTTGATGAAAAAGTTGTTTTTAAGCCATTCAATTTTGATTCTCTTGCTGAGCAAATAATAAAAAGCATTGACATACAATTTCAAAAGATGTTTGGGTCAGAATTTATGCTGGAAATTGAGTATGAGGTGATGACACAGATTCTTGCAGCTGCTTGGTTATCTGACAAGAAAAAAGCATTGGAAGATTGGGTTGAACATGTTCTTGGCAGAAGCTTTGCTGAAGCTCAACAGAAGTACCACTTTGCACCAGAATGTGTGATGAAACTTGTTAACTGTGAAAGAATTTTTTTGGAAGATCAATCTCCTGGAGTATGCCTTCCAGCTAGAATTAACTTGAACTGA 3279 0.4648 MPTPVSTARQCLTDEAARALDDAVTVARRRSHAQTTSLHAVSALLSLPSATLRDACARCRSCSYSPRLQFRALELSVGVSLDRLPTTKTAGGSDGGSGDEGPPVSNSLMAAIKRSQANQRRHPDSFHLMQMMQQQQHQTTSLLKVELKHFILSILDDPIVSRVFGEAGFRSYDIKLALLQPPPPSRIFSRLTPPVFLCNLEPVQKTGSRLDENCRRIVEVVTRKSKRNPLLMGMYAKTALKSFIECVESRKGGVLPCELNGLSVVSVEKEIGEFLREGGSGGKIFEDVGRLVEQCSGAGVVVCFGEIELFVGGNEEGVGFVVSQLTRLLGVHLGKVWLVGVAGTSEAYSKFLRLFPTVDKDWDLHLLTMTSATPFMEGLYPKSSLMGSFVPFGGFFSTPSELKNPVSCRNASSLTRCDTCNEKCEQEVADILRVGPATSASGYSTSLPWLQKVNVETDRGLDVAKTNEENSSLNGKILGLQRKWSDICQRLHQNRSLPEFDISRTRFQVPSLEGFQFGPGCSSKGPSHSEIQYSKISCMSIESQNAFPFKQILPVSVPFDTVSITDEADHIAKVSKSDMHSTWVSPSPKANLSLLDHTSSSSLTPVTTDLGLGTIYKSATHEPDTPKLSDHKKHLHNLPDSLSSDFNPKNECSSHQIARSSSCSGPNLEGNFETVDFKSLYHLLTEKVGWQDEAIYAINQTVSRCRSGAGKRSSGSHVRADIWLAFLGPDRLGKRKLASALAEILFGNKQSLITVDLSSQDKCYPSNSIFEFQDSYCHDVLMRKTVVDYIAWELSKKPHSVVFIDNVDQADFVVQNSLFQAIRTGKFSYSHGREISINNAIFIVTSSVFKGSGSLNLEEDPKMFQEERILEAKRCQMQLSLGDSSQDVSKRSGCTSVKVAQRKGTSKTTILNKRKLVESGDSAEKASCKTLKQVMEASRSYLDLNMPLEEVEEDNNYNDYETESIVENCGSWLNDLCDQVDEKVVFKPFNFDSLAEQIIKSIDIQFQKMFGSEFMLEIEYEVMTQILAAAWLSDKKKALEDWVEHVLGRSFAEAQQKYHFAPECVMKLVNCERIFLEDQSPGVCLPARINLN* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0717 1092 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1092 - -
Pvu6g0717 1092 CDD AAA 724 847 - -
Pvu6g0717 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 673 848 IPR027417 -
Pvu6g0717 1092 Pfam AAA domain (Cdc48 subfamily) 724 848 IPR003959 GO:0005524|GO:0016887
Pvu6g0717 1092 SUPERFAMILY Double Clp-N motif 12 133 IPR036628 -
Pvu6g0717 1092 MobiDBLite consensus disorder prediction 84 106 - -
Pvu6g0717 1092 Gene3D - 10 180 IPR036628 -
Pvu6g0717 1092 ProSiteProfiles Clp repeat (R) domain profile. 8 184 IPR004176 -
Pvu6g0717 1092 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1092 - -
Pvu6g0717 1092 Gene3D - 658 888 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0717 Pvu-Chr6 18741384 18748029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0717 - - var:108343130 1932.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0717 6 18741384 18748029 Pvu6g0717 6 18741384 18748029 ECH
Pvu6g0717 6 18741384 18748029 Pvu1g2521 1 50331097 50336473 ECH
Pvu6g0717 6 18741384 18748029 Pvu8g2313 8 53685811 53691299 ECH
Pvu6g0717 6 18741384 18748029 Pvu8g2697 8 57362866 57368759 ECH
Pvu1g2521 1 50331097 50336473 Pvu6g0717 6 18741384 18748029 ECH
Pvu7g2771 7 50730076 50734392 Pvu6g0717 6 18741384 18748029 ECH
Pvu6g0717 6 18741384 18748029 Pvu8g2697 8 57362866 57368759 PCT