Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0059 ATGTCATCTGCTGGTGTCACTACTCTTAGTCCAGTGGATCCCACTGAACCATTGTTGTCTCCAAATGTATCTCATTTTCCGTCGTCTTTGGAGGAAAACTCCATTTTCATATTTCTCTCGTTTTCGGGTTCGTTGACGCCTATTCGTGTTATGGAATGGGATACTATTGAGTCTGTGAAATTCAAAATTCAGAGGTGTGAGAGTCTTCCGTTTTTAACTAACAAACAGAAGTTGGTTTACGCCGGTCGTGAACTTGCTCGGAGTGATACTTTGCTCAAGGATTATGGAGTTACCGATGGAAATGTTTTGCATTTGATAATCAAACTTTCAGATCTTCAGCTCATCAATGTGAAGACATCTTCTGGGAAGGAGTTCACTTTTCAGGTTGAACGAGGTAGGGATGTCAAGTACATCAAGCGAAGGATTGCTAAAAAGGAGAAACAATTTGATGACCCTGAGGACCAGGAGCTTGTGTGTAATGGGGAACGGCTTGAGGATCAAAAGATTATTGATGATATCTGCTGCAAGCATAATGATGCAGTGGTGCATCTGTTTGTTAGAAAGAAGCATGCAAAAGTTCATAGAAGACCCCTTGAGTTGTCCATTGTAGCAACAGACTTGGCTGATAAGAAAACTAAAGATGTTTGCGGAAATTCTAGTGATAGAAAATTTGATGTTGGTGGTGTGGAAGATACTCTTTCCATTCAAAGAGTTGTGCCAAGAAAGCTTCCTGATAGAGATTTTCTTTTGGAGCCAATTATAATTAACCCTAAAATTGAGTTAGCTCCAGTGATTCAGAATATGGTTAACACTGCATACGATGGACTAGCTAGTGAGAATCATCCAATAGGATCTGCAGAAGGTACAGGGGGAGCTTACTTTATGCTTGATTCAATTGGTCAGAGGTATGTGTCTGTTTTTAAACCTATTGATGAAGAGCCAATGGCTGTGAATAACCCTCGAGGTCTTCCATTATCATTAAATGGCGAAGGTTTAAAAAAGGGTACAAGAGTCGGCCAGGGAGCGTTCAGGGAAGTTGCGGCTTATGTTTTGGATCATCCAATAAGCGGTCGCCGCAAATTATTTGGTGATGTGAAGGGTTTTGCCGGTGTTCCTCCAACTTTGATGGTAAAATGCTTGCACAAAGGATTTAACCATCCAGGAGACTTGATTGCTAAGATTGGATCCATGCAGATGTTTGTGAAAAATAACGGGAGCTGCGAAGATATCGGTCCTGGGGCTTTCCCAGTAAATGAAGTACACAAAATTACTGTACTGGACATGAGATTGGCAAATGCAGATAGACATGCTGGGAATATTTTGGTCAGCGCAGAGGAGCACAATGACCAGCCTGCTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACCTTTGAATGGCTTTACTGGCCCCAAGCCCGGAAACCATATTCCGCGGAAACTATTGAGTACATAAAGTCACTGAATGCTGAAGAAGATATTGCACTTTTGAAGTTTCATGGATGGGATTTGCCAATTGAATGTGCCCGCACTCTTAGAATCTCGACCATGCTTTTGAAGAAAGGGGTTGAGAGAGGATTGACACCTTTTGCAATTGGAAACTTGATGTGCAGGGAATCATTGAACAAAGAATCTGTGATAGAAGAAATAGTTGAAGAAGCATTGGATTCTGTTCTTCCGGGCACAAGTGAAGCTACATTGCTGGATGCTGTTTCTCAAATTATGGATCGGCGTCTTCATAATATTTTCAACTCTCCTTTTTAA 1782 0.4141 MSSAGVTTLSPVDPTEPLLSPNVSHFPSSLEENSIFIFLSFSGSLTPIRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGKEFTFQVERGRDVKYIKRRIAKKEKQFDDPEDQELVCNGERLEDQKIIDDICCKHNDAVVHLFVRKKHAKVHRRPLELSIVATDLADKKTKDVCGNSSDRKFDVGGVEDTLSIQRVVPRKLPDRDFLLEPIIINPKIELAPVIQNMVNTAYDGLASENHPIGSAEGTGGAYFMLDSIGQRYVSVFKPIDEEPMAVNNPRGLPLSLNGEGLKKGTRVGQGAFREVAAYVLDHPISGRRKLFGDVKGFAGVPPTLMVKCLHKGFNHPGDLIAKIGSMQMFVKNNGSCEDIGPGAFPVNEVHKITVLDMRLANADRHAGNILVSAEEHNDQPALIPIDHGYCLPTSFEDCTFEWLYWPQARKPYSAETIEYIKSLNAEEDIALLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVEEALDSVLPGTSEATLLDAVSQIMDRRLHNIFNSPF* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0059 593 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Psa3g0059 593 Pfam Ubiquitin family 37 109 IPR000626 GO:0005515
Psa3g0059 593 Pfam Phosphatidylinositol 3- and 4-kinase 288 537 IPR000403 -
Psa3g0059 593 SUPERFAMILY Ubiquitin-like 20 109 IPR029071 -
Psa3g0059 593 SMART ubq_7 113 187 IPR000626 GO:0005515
Psa3g0059 593 SMART ubq_7 35 108 IPR000626 GO:0005515
Psa3g0059 593 ProSiteProfiles Ubiquitin domain profile. 54 108 IPR000626 GO:0005515
Psa3g0059 593 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 589 IPR044571 -
Psa3g0059 593 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 279 572 IPR000403 -
Psa3g0059 593 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 589 - -
Psa3g0059 593 Gene3D - 26 113 - -
Psa3g0059 593 Gene3D - 114 199 - -
Psa3g0059 593 ProSiteProfiles Ubiquitin domain profile. 115 172 IPR000626 GO:0005515
Psa3g0059 593 CDD Ubl_ubiquitin_like 115 185 - -
Psa3g0059 593 SUPERFAMILY Protein kinase-like (PK-like) 425 589 IPR011009 -
Psa3g0059 593 SUPERFAMILY Ubiquitin-like 106 190 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0059 Psa-Chr3 8720807 8724128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0059 32 585 Acyl Lipid Metabolism Gene Families AT5G24240 53.846 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0059 - - gmx:100791631 982.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0059 3 8720807 8724128 Psa5g1839 5 141167637 141171111 ECH
Psa3g0059 3 8720807 8724128 Psa3g0059 3 8720807 8724128 ECH
Psa4g3741 4 315062819 315066026 Psa3g0059 3 8720807 8724128 ECH
Psa2g4242 2 424036733 424040411 Psa3g0059 3 8720807 8724128 ECH
Psa7g0558 7 37537823 37541054 Psa3g0059 3 8720807 8724128 ECH
Psa3g0059 3 8720807 8724128 Psa4g3741 4 315062819 315066026 PCT