Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1839 ATGAAAATGGTGAATATACCGGTCGTTTTAGTCCTCATACGAGGGATTCAATTTAGATTTACCTGTGATCCCATGCATATTATGGAGACGGATTCCATTGCTTCGGTGAAGCTGAGAATTCAAACCTTTAAAGGATTTTTTGTAAAGAAATCGAAACTGATTTTTGAAGGGAAGGAATTGGCTCAGGACAAATCCTGTGTCCGTGATTATGGAGTTGCTGATGGAAATGTTTTGCATCTAGTTCTAAGATTTTCTGATCTTAAAGCTATTACAGTTAGGACTTTATCTGGTAAGGAGTTTGGGTTTTATGTCGAGAAGACTAGGAATGTGGGTTATGTGAAGCAGCAGATTGCAAGGAAAGGGCAAGGGTTCTTCGATCTTGCAGATCAAGAATTGGTATGGAAAGGCGAGGCACTTGAAGACCAGAGACTTATTGAGGACATCGGTAAGAACAGCGATGCTGTGATTCATTTGTTGGTCAGGGTATCAGATGCCAAGGTAAGAACTAAACCAGTAGAAAAGGGTTTTGAATTATCAATTGAGGCATCCTCGGTATCTGATAGAGTACCAAATTTCGCTGCAGACCAGTTAGCGCCACTGTCTATAACAAATAAGGTCCCGAAGAGGAACCGGTTGACTAGTGAATTTCTTTTGGAACCAATTTTTAAGAATTCCAATATCAAAATTCCACCACTGATCCTGGAACTAGTTAAAATTACATTAGAGGGGTTAGAGAAAGGCCGCAAACCAATTCGTTCATCAGAGGGATCGGGAGGAGCTTATCTCATGCATGATTCATCTGGCTTGAAGTATGTTTCAGTTTTCAAGCCTACTGATGAGGAGCCAATGGCAATTAATAATCCTCGCAGCTTACCTATCTCTATCGACGGTGAAGGGTTAAAGAAAGGAACACGAGTAGGGCAAGGTGCGTTGAGAGAACTTGCAGCTTACATCTTGGATCATCCGAGGAAAGGACCTCGCTCATATCACAACAATGAGGAGCAGGGGTTTGCCGGAGTTCCGCCTACAGTTATGGTCAAATGCTTGCATGAAGGGTTCCATCATCCGGAAGGTTACAAGAATGTTAAAATAGGATCACTTCAGATGTTTATGAGGAACATTGGAAGCTGCGAAGATATGGGCCCTAGTGCATTTCCGGTGGAAGAGGTTCACAAGATCTCTGTGCTGGATATCAGGTTGGTAAATGCAGATAGACATGCCGGGAACATTTTGGTTGCCAAGAACGGTGAAGACGACCCAACTGTCCTTATTCCAATTGATCATGGCTATTGCCTACCCGAGAGTTTTGAAGACTGCACTTTTGACTGGTTATACTGGCCACAAGCTCAAGAACCTTACTCCCCAGACACCATTGAGTACATAAAATCTCTTAATGCAGAAGATGATATCAAGCTTTTGAAATCTCATGGATGGGAACTTCCTCCTGAATGCGCCCGGATCGTTCATATATCAACCATGCTTCTTCAGAAAGGTGCAGAGAAAGGACTCAATCCTTTCACTATTGGAAGCATTATGTGTAGAGAAACATTGAAGAAAAAGTCTGTCATTGAGCAGATTATTCAGAAGGCGGAAGAAGCTGCATTTCCCGGAACAAGCGAAGCTGCATTCCTTGATCTTGTTTCTGTGATCATGGAAAATCATTTAGAAGGGCTGTTCCCATGA 1683 0.4242 MKMVNIPVVLVLIRGIQFRFTCDPMHIMETDSIASVKLRIQTFKGFFVKKSKLIFEGKELAQDKSCVRDYGVADGNVLHLVLRFSDLKAITVRTLSGKEFGFYVEKTRNVGYVKQQIARKGQGFFDLADQELVWKGEALEDQRLIEDIGKNSDAVIHLLVRVSDAKVRTKPVEKGFELSIEASSVSDRVPNFAADQLAPLSITNKVPKRNRLTSEFLLEPIFKNSNIKIPPLILELVKITLEGLEKGRKPIRSSEGSGGAYLMHDSSGLKYVSVFKPTDEEPMAINNPRSLPISIDGEGLKKGTRVGQGALRELAAYILDHPRKGPRSYHNNEEQGFAGVPPTVMVKCLHEGFHHPEGYKNVKIGSLQMFMRNIGSCEDMGPSAFPVEEVHKISVLDIRLVNADRHAGNILVAKNGEDDPTVLIPIDHGYCLPESFEDCTFDWLYWPQAQEPYSPDTIEYIKSLNAEDDIKLLKSHGWELPPECARIVHISTMLLQKGAEKGLNPFTIGSIMCRETLKKKSVIEQIIQKAEEAAFPGTSEAAFLDLVSVIMENHLEGLFP* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1839 560 Pfam Phosphatidylinositol 3- and 4-kinase 256 506 IPR000403 -
Psa5g1839 560 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 22 556 IPR044571 -
Psa5g1839 560 SUPERFAMILY Protein kinase-like (PK-like) 394 557 IPR011009 -
Psa5g1839 560 SMART ubq_7 9 83 IPR000626 GO:0005515
Psa5g1839 560 SMART ubq_7 88 161 IPR000626 GO:0005515
Psa5g1839 560 Pfam Ubiquitin family 90 162 IPR000626 GO:0005515
Psa5g1839 560 Pfam Ubiquitin family 25 84 IPR000626 GO:0005515
Psa5g1839 560 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 247 542 IPR000403 -
Psa5g1839 560 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 4 22 556 - -
Psa5g1839 560 Gene3D - 21 86 - -
Psa5g1839 560 ProSiteProfiles Ubiquitin domain profile. 88 165 IPR000626 GO:0005515
Psa5g1839 560 SUPERFAMILY Ubiquitin-like 85 163 IPR029071 -
Psa5g1839 560 SUPERFAMILY Ubiquitin-like 24 84 IPR029071 -
Psa5g1839 560 CDD Ubl_ubiquitin_like 90 159 - -
Psa5g1839 560 Gene3D - 89 176 - -
Psa5g1839 560 ProSiteProfiles Ubiquitin domain profile. 6 83 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1839 Psa-Chr5 141167637 141171111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1839 24 556 Acyl Lipid Metabolism Gene Families AT5G24240 61.453 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1839 - - gmx:100812724 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g3741 4 315062819 315066026 Psa5g1839 5 141167637 141171111 ECH
Psa3g0059 3 8720807 8724128 Psa5g1839 5 141167637 141171111 ECH
Psa5g1839 5 141167637 141171111 Psa5g1839 5 141167637 141171111 ECH