LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g4242	ATGTCGGTTGCTGGTGTTGCTCTCAGACCGATTTTAAAAGAATCGGCAAATTCGCAATTTCACCGGCAAGAACGAATTGCGCGTTGTTCTAGCGAATCTATTTTGATCTATCTTACCGTCGACGGTGCCGTTACGCCCATGCGCGTTCTCGAATCCGATTCCATTGCTTCCGTGAAAATGAGGATTCAGACGCGCAATGGTGTTTCCGAGAAGAAACAGATGCTGGTTTCGAATGGCAGAGAGTTAGCGCGGAATAATAAGCTTGTTAAGGAATACGGTGTTACTGCTGGGAATGTTGTTCATATGGTTCTTCGTTTGTCTGATATGATTTTCATTGTTGTCAGGACAACGTGCGGTAAAGAGTTCGAGTTAAAAGTTGATCGGCACAGAAATGTAGCGTATCTTAAGCATTGTATTAAGAGAAAGGGGAAAGGTTTTATTGATCTTGTTGAGGATGAACAAGAGTTTTTCTGCTGTGGCCACAAGCTTGATGACAAGAGAATTTTTGATGATATTTGTAAGAATGATGATGATGTTATTCATCTCATTGTTAAGAAATCCGCAAAAGTTAAGGCTAAGGTTGCTGGTAATAAGGATTTGGAGCTTTCTGTTGTTGCGGAGGATCACAATCAGAATGGGGTAGTTAAGGTTATAGAAGAACAACCCTGTGGCGGTGTTGATTTTTGGTTAGAGCCGTTTTTTGTTATTCCTAGGATCAATTTTTTTCCTTTCCTTTGGGATATCATAGATTCAACTTTTAATGGTTTGAAAAATGGAAATAAACCTGTTAGATCTTCTGAAGGAACAGGTGGGGCTTACTTTATGCAAGATTCAAGAGGTGTGGAATATGTTTCTGTTTTCAAACCCATTGACGAGGAACCAATGGCTGTTAATAATCCCCGTGGATTGCCCGTTTCCTCGAATGGAGAGGGTTTAAAGAGAGGGACAAAGGTTGGAGAAGGAGCTGTGAGAGAAGTTGCAGCCTATATACTGGATCATCCAAAGTCTGGCCCGCGTTTGGTGACTGGCGAAGCGGTTGGTTTTGCTGGTGTTCCGCCTACTGTTTTGGTTCGGTGTTCACATGAAGCGTTTAACTATAACTACCCTAATGATGGGGATTGTGGTTCTTTGATGATGGGTCGGAAGGTGGGATCTTTACAGAAGTTTATGAGTAATGATGGGAATTGTGAGGATATTGGACCTGGTGCTTTTCCTGTGGAAGAGGTGCATAGGATCAGTGTGCTTGATATAAGAATGGCTAATGCAGATAGGCACGCAGGGAATATATTGTTTAGAAAAGAGTCAAGTGGCAAGACTCTGCTCATTCCCATTGATCATGGCTACTGTCTTCCTGAGAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCTCAAGCGCGTCAGCCATACTCTCCTGATACAGTTGATTATATAAAGACTCTGGATGCTGAAAAAGACATCGAACTTCTGAAATATTATGGTTGGAATGTTCCAGTTGAGTGTGCAAGGACACTCCGCCTCTCCACAATGTTATTGAAGAAAGGGGTTGAGAGAGGTCTCACTCCTTATGCCATTGGAAACGTCATGTGTAGGGAAAATTTGAACAAAAAATCAGTAATTGAGGAGATTGTTTTTGAAGCCCAGGAATCATTGCTCCCTGGCATGAATGAATCTGTTTTTCTCGAAATTGTATCGCAGATCATGGATTCCCGCCTTGGTGAGCTTTCGCTATAG	1737	0.4208	MSVAGVALRPILKESANSQFHRQERIARCSSESILIYLTVDGAVTPMRVLESDSIASVKMRIQTRNGVSEKKQMLVSNGRELARNNKLVKEYGVTAGNVVHMVLRLSDMIFIVVRTTCGKEFELKVDRHRNVAYLKHCIKRKGKGFIDLVEDEQEFFCCGHKLDDKRIFDDICKNDDDVIHLIVKKSAKVKAKVAGNKDLELSVVAEDHNQNGVVKVIEEQPCGGVDFWLEPFFVIPRINFFPFLWDIIDSTFNGLKNGNKPVRSSEGTGGAYFMQDSRGVEYVSVFKPIDEEPMAVNNPRGLPVSSNGEGLKRGTKVGEGAVREVAAYILDHPKSGPRLVTGEAVGFAGVPPTVLVRCSHEAFNYNYPNDGDCGSLMMGRKVGSLQKFMSNDGNCEDIGPGAFPVEEVHRISVLDIRMANADRHAGNILFRKESSGKTLLIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPDTVDYIKTLDAEKDIELLKYYGWNVPVECARTLRLSTMLLKKGVERGLTPYAIGNVMCRENLNKKSVIEEIVFEAQESLLPGMNESVFLEIVSQIMDSRLGELSL*	579

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa2g4242	578	Pfam	Phosphatidylinositol 3- and 4-kinase	268	525	IPR000403	-
	Psa2g4242	578	ProSiteProfiles	Ubiquitin domain profile.	36	109	IPR000626	GO:0005515
	Psa2g4242	578	Pfam	Ubiquitin family	40	106	IPR000626	GO:0005515
	Psa2g4242	578	SUPERFAMILY	Ubiquitin-like	106	186	IPR029071	-
	Psa2g4242	578	ProSiteProfiles	Ubiquitin domain profile.	110	189	IPR000626	GO:0005515
	Psa2g4242	578	SUPERFAMILY	Ubiquitin-like	38	107	IPR029071	-
	Psa2g4242	578	ProSiteProfiles	Phosphatidylinositol 3- and 4-kinases catalytic domain profile.	259	560	IPR000403	-
	Psa2g4242	578	SMART	ubq_7	34	105	IPR000626	GO:0005515
	Psa2g4242	578	SMART	ubq_7	110	185	IPR000626	GO:0005515
	Psa2g4242	578	CDD	Ubl_ubiquitin_like	112	183	-	-
	Psa2g4242	578	Gene3D	-	111	201	-	-
	Psa2g4242	578	PANTHER	PHOSPHATIDYLINOSITOL 4-KINASE GAMMA	1	577	IPR044571	-
	Psa2g4242	578	Gene3D	-	13	109	-	-
	Psa2g4242	578	SUPERFAMILY	Protein kinase-like (PK-like)	413	576	IPR011009	-
	Psa2g4242	578	PANTHER	PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN	1	577	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa2g4242	Psa-Chr2	424036733	424040411	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa2g4242	1	577	Acyl Lipid Metabolism Gene Families	AT5G24240	53.276	0.0	608

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g4242	-		-	gmx:100787492	842.032

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa2g4242	2	424036733	424040411	Psa2g4242	2	424036733	424040411	ECH
	Psa2g4242	2	424036733	424040411	Psa4g3741	4	315062819	315066026	ECH
	Psa2g4242	2	424036733	424040411	Psa3g0059	3	8720807	8724128	ECH
	Psa2g4242	2	424036733	424040411	Psa7g0558	7	37537823	37541054	PCT