Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00704 ATGGCGATCCGCACCTTCATGGTCCGTAGGACCCAAGACGACATTCACAGCGACACTTGGAGAGCCGCTCTCTCCGAATTCATCTCCACACTCATCTTCGTTTTCGCTGCCTCCGGCTCCACCATCGCCGTCAAAAACCTCAGCGCCGACGCGCCCACCGCTCTCGTCATCGTCGCCGTTGCCAACGCCTTCGCCTTCTTCGTCGCCGTCTCCGTCAGCACAAATGTCTCCGGCGGCCACGTCAACCCCGCCGTCACCTTCGGCTTTTTCGTCGGCGGCAACCTTACCTTGCTCCGCTGCATCCTCTTCTGGATCGCTCAGATCCTCGGCTCCGTCATCGCTTGCTTGCTCCTCAAATTCACCTCCGGCGGACAGAGAGTACCGGTTTTCGGACTTTCGAGTGGTGTGAAAGTGGGAAACGCTTTGGCGTTGGAAATGGTGATGACCTTTGGATTGGTGTACGCGGTGTATGCTACCGCCGCTGACCCCAGGAGAAGAAGGAATAATTTGGGAACGATAGCGCCAATTGTGATTGGCTTAATCGTTGGAGCGAATATTTTGGTGGCTGGGCCTTTTGATGGGGGCTCCATGAACCCAGCTGCGTCGTTTGGGCCTGCACTGGTGGGCTGGAACTGGGAAAACCATTGGGTTTACTGGGTTGGGCCTCTCGTTGGTGGTGGGCTTGCTGGGTTTCTTTATGAGTTGGTTTTTGTTAGCTTCACCCGTCTGAGGTTCCGCAGAGATTACCTTAATTATTATTGA 762 0.5538 MAIRTFMVRRTQDDIHSDTWRAALSEFISTLIFVFAASGSTIAVKNLSADAPTALVIVAVANAFAFFVAVSVSTNVSGGHVNPAVTFGFFVGGNLTLLRCILFWIAQILGSVIACLLLKFTSGGQRVPVFGLSSGVKVGNALALEMVMTFGLVYAVYATAADPRRRRNNLGTIAPIVIGLIVGANILVAGPFDGGSMNPAASFGPALVGWNWENHWVYWVGPLVGGGLAGFLYELVFVSFTRLRFRRDYLNYY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00704 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g00704 253 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g00704 253 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g00704 253 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g00704 253 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g00704 253 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g00704 253 SUPERFAMILY Aquaporin-like 15 242 IPR023271 -
Phco6g00704 253 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g00704 253 ProSitePatterns MIP family signature. 80 88 IPR022357 -
Phco6g00704 253 Gene3D Glycerol uptake facilitator protein. 5 243 IPR023271 -
Phco6g00704 253 FunFam Probable aquaporin TIP1-1 4 247 - -
Phco6g00704 253 Pfam Major intrinsic protein 17 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g00704 253 PANTHER AQUAPORIN-8 12 239 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00704 Phco-Chr6 7016322 7017592 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00704 6 7016322 7017592 Phco2g02025 2 50965260 50967243 ECH
Phco6g00704 6 7016322 7017592 Phco6g02197 6 43118265 43120660 ECH
Phco6g00704 6 7016322 7017592 Phco6g00704 6 7016322 7017592 ECH
Phco6g00704 6 7016322 7017592 Phco10g01521 10 38017229 38018387 ECH
Phco2g02072 2 51476561 51477403 Phco6g00704 6 7016322 7017592 PCT