Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02072 ATGCCGATCAGAAACATCGCCATCGGAAGGCCCGAGGAGGCCACTCACCCCGACACCTTGAAGGCGGGTCTGGCTGAGTTCATCTCCACCCTCATCTTCGTGTTCGCCGGCTCGGGTTCCGGCATCGCCTTCAACAAGCTTACCGACAACGGCGCCGCCACACCTGCCGGTCTCATCTCCGCCTCCATCGCCCACGCATTCGGCCTTTTTGTCGCCGTCTCCGTCGGCGCCAACATCTCCGGAGGTCATGTGAACCCTGCCGTCACCTTCGGTGCCTTCATCGGAGGCAACATCACCTTTCTCCGCGGTGTCGTCTACATCATCGCCCAGCTCCTAGGCTCCGTGGTGGCCTCCCTCCTCCTGGCCTTCGTGACCTCCTCCACTGTTCCCGCATTTGGACTCTCGGCTGGAGTTGGAGTGGGTAACGCTTTGGTGTTGGAGATCGTGATGACCTTCGGTTTGGTGTACACTGTCTACGCTACCGCCATTGACCCCAAGAGAGGTAGTTTGGGAACCATTGCTCCCATCGCCATTGGTTTCATTGTTGGAGCTAACATTTTGTTGGGTGGGGCCTTCTCCGGAGCAGCCATGAACCCTGCAGTCACATTCGGGCCTGCCGTTGTTAGCTGGACCTGGACCAACAACTGGATCTACTGGGTTGGCCCTCTTATCGGTGGTGGCCTCGCTGGGGTTATCTACGAGGTCGTCTTCATCAGCCACACCCACGAGCAGCTCCCCACCACTGACTACTAG 753 0.5896 MPIRNIAIGRPEEATHPDTLKAGLAEFISTLIFVFAGSGSGIAFNKLTDNGAATPAGLISASIAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITFLRGVVYIIAQLLGSVVASLLLAFVTSSTVPAFGLSAGVGVGNALVLEIVMTFGLVYTVYATAIDPKRGSLGTIAPIAIGFIVGANILLGGAFSGAAMNPAVTFGPAVVSWTWTNNWIYWVGPLIGGGLAGVIYEVVFISHTHEQLPTTDY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02072 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Phco2g02072 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02072 250 PANTHER AQUAPORIN-8 6 245 IPR034294 -
Phco2g02072 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02072 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Phco2g02072 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Phco2g02072 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02072 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02072 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02072 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02072 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02072 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02072 250 SUPERFAMILY Aquaporin-like 12 246 IPR023271 -
Phco2g02072 250 ProSitePatterns MIP family signature. 196 204 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02072 Phco-Chr2 51476561 51477403 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02072 2 51476561 51477403 Phco2g02072 2 51476561 51477403 ECH
Phco2g02072 2 51476561 51477403 Phco6g00704 6 7016322 7017592 PCT