Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01521 ATGGCCAAAGACGTTGAGCAGGTCACAGAGCAACCCGAATACTCCGCCAAGGACTACCACGACCCACCTCCCGCGCCGTTGATCGACCCCGATGAGCTCACCAAGTGGTCCTTGTACAGAGCCGCCATAGCCGAATTCATAGCCACTCTCCTCTTCCTTTACATCACCGTCTTGACCATTATCGGCTACAAGAGACAGACCGACACCAATATTGCCGGTAACACCGAGTGTGATGGGGTTGGCATTCTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCTGGCATCTCCGGGGGACACATCAACCCTGCGGTGACACTGGGGTTGTTCCTGGGGCGCAAGGTGTCGTTGGTGAGGGCGTTGTTGTACATGGTAGCACAGTGCGCCGGTGCAATCTGCGGTGCTGGGTTGGCGAAGGGGTTCCAAAAATCCTACTACAACAGGTACGGTGGAGGAGCTAACACTGTGAGCGATGGCTACAACAAAGGCACTGCCTTGGGAGCTGAAATCATCGGTACCTTTGTTCTTGTCTACACAGTTTTCTCCGCCACTGATCCCAAGAGAAACGCCAGGGACTCTCATGTTCCTGTACTAGCACCCCTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTATCACTGGAACCGGCATTAACCCGGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTATTGGAGCTGCGGTGGCTGCATTGTACCACCAGTACATTCTGAGAGCTGCAGCAATAAAGGCTCTTGGATCCTTCAGGAGCAACGCATAA 864 0.5394 MAKDVEQVTEQPEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQTDTNIAGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTLGLFLGRKVSLVRALLYMVAQCAGAICGAGLAKGFQKSYYNRYGGGANTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFIGAAVAALYHQYILRAAAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01521 287 MobiDBLite consensus disorder prediction 1 17 - -
Phco10g01521 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco10g01521 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco10g01521 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco10g01521 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco10g01521 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco10g01521 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco10g01521 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco10g01521 287 NCBIfam MIP family channel protein 44 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco10g01521 287 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
Phco10g01521 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 -
Phco10g01521 287 FunFam Probable aquaporin PIP1-2 25 287 - -
Phco10g01521 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco10g01521 287 MobiDBLite consensus disorder prediction 1 25 - -
Phco10g01521 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Phco10g01521 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01521 Phco-Chr10 38017229 38018387 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01521 10 38017229 38018387 Phco10g01521 10 38017229 38018387 ECH
Phco2g02025 2 50965260 50967243 Phco10g01521 10 38017229 38018387 ECH
Phco6g00704 6 7016322 7017592 Phco10g01521 10 38017229 38018387 ECH
Phco10g01521 10 38017229 38018387 Phco9g00871 9 6760152 6761685 PCT