Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02197 ATGGCGAAGGACGTTGAGGTTACCGAGCGTGGCTCCTTCTCTGGGAAGGATTACCATGACCCTCCTCCTGCACCCCTCATTGATACTGAGGAGCTAACAAAGTGGTCCTTTTACAGGGCTCTCATTGCTGAGTTCATTGCCACTTTGCTTTTCCTCTACATTACTGTGCTCACAGTTATAGGGTACAAGCACCAGAGTGACCTCAAGGACCGTGGTGATGCCTGTGGTGGGGTTGGCATTCTTGGCATTGCATGGGCCTTTGGTGGCATGATCTTCATCCTTGTATACTGCACTGCTGGGATATCAGGGGGTCACATTAACCCAGCAGTAACATTTGGGCTGTTTTTGGCTCGCAAGGTGTCTTTGATCCGAGCTATCATGTACATGGTGGCTCAGTGCTTGGGGGCTATCTGTGGAGTTGGCCTGGTCAAGGCCTTCCAAAAGTCTTACTACAACAGGTATGGTGGTGGGGCTAATTTCCTGGCTGATGGGTACAGCACAGGTACTGGATTGGGTGCCGAGATCATTGGCACCTTTGTTTTGGTATACACTGTCTTCTCTGCCACTGATCCCAAGAGGAATGCCAGAGATTCCCATGTGCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTCACTGGCACAGGTATCAACCCTGCTAGGAGTCTCGGAGCTGCTGTTATCTACAACAAAGATAAGCCCTGGGATGACCATTGGATCTTTTGGGTAGGACCATTTATTGGGGCAGCCATTGCAGCTTTCTACCACCAGTTCATCTTGAGAGCAGGGGCAGTTAAGGCCCTTGGATCATTCAGGAGTAACCCCCATGTTTGA 864 0.5058 MAKDVEVTERGSFSGKDYHDPPPAPLIDTEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKHQSDLKDRGDACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKSYYNRYGGGANFLADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02197 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Phco6g02197 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g02197 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Phco6g02197 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g02197 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 276 IPR034294 -
Phco6g02197 287 MobiDBLite consensus disorder prediction 1 16 - -
Phco6g02197 287 MobiDBLite consensus disorder prediction 1 25 - -
Phco6g02197 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g02197 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Phco6g02197 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g02197 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g02197 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g02197 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g02197 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g02197 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco6g02197 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02197 Phco-Chr6 43118265 43120660 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02025 2 50965260 50967243 Phco6g02197 6 43118265 43120660 ECH
Phco6g00704 6 7016322 7017592 Phco6g02197 6 43118265 43120660 ECH
Phco6g02197 6 43118265 43120660 Phco6g02197 6 43118265 43120660 ECH