Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02025 ATGGCCAAGGACATCCAAACCGAGTCTGAGGTACCAACTGGGTTGACCCACAAGGACTACTACGATCCACCCCCAGCCCCATTATACGACGCCGCCGAGCTCCGCAAGTGGTCCTTTTACAGGGCCCTCATCGCTGAGTTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGCTACAACCACCAGATCAATGCCGGTGACTCCTGCGAAGGCGTTGGCATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCGGGCATTTCCGGGGGTCACATAAACCCCGCCGTCACGTTCGGGTTGTTTCTTGCTAGGAAGGTGTCGCTAGTGAGAGCAATTGCGTACATGGTGGCTCAGTGCTTGGGAGCTATATCTGGCGTGGGGCTGGTAAAGGCGTTTCAGAAGAGCTACTACAACAGGTACAACGGTGGCGTGAACTTGCTCTCTGATGGGTACAGTAAAGGCACTGGCTTGGGCGCAGAGATTATTGGCACCTTTGTTCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAAAGCCAGAGATTCCCATGTTCCCGTTTTGGCACCACTTCCGATTGGGTTTGCAGTGTTCATGGTTCACTTGGCCACCATCCCTGTCACCGGCACTGGCATCAACCCCGCCAGAAGCCTCGGCCCTGCTGTCATATTTAACAACGAGAAGGCATGGGATGACCAGTGGATCTTCTGGGTTGGACCCTTCGTGGGTGCAGGCATTGCTGCAGTCTACCACCAGTACGTATTGAGGGCACACGCGGCAAAGGCTCTCGGGTCATTCAGGAGCTCCTCAAACCTGTGA 861 0.5621 MAKDIQTESEVPTGLTHKDYYDPPPAPLYDAAELRKWSFYRALIAEFVATLLFLYVTILTVIGYNHQINAGDSCEGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAIAYMVAQCLGAISGVGLVKAFQKSYYNRYNGGVNLLSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGPAVIFNNEKAWDDQWIFWVGPFVGAGIAAVYHQYVLRAHAAKALGSFRSSSNL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02025 286 Gene3D Glycerol uptake facilitator protein. 26 286 IPR023271 -
Phco2g02025 286 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Phco2g02025 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 280 IPR034294 -
Phco2g02025 286 CDD MIP 41 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02025 286 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02025 286 PRINTS Major intrinsic protein family signature 208 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02025 286 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02025 286 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02025 286 PRINTS Major intrinsic protein family signature 172 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02025 286 PRINTS Major intrinsic protein family signature 248 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02025 286 FunFam Probable aquaporin PIP1-2 26 284 - -
Phco2g02025 286 NCBIfam MIP family channel protein 45 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02025 286 Pfam Major intrinsic protein 33 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phco2g02025 286 SUPERFAMILY Aquaporin-like 33 272 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02025 Phco-Chr2 50965260 50967243 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02025 2 50965260 50967243 Phco6g02197 6 43118265 43120660 ECH
Phco2g02025 2 50965260 50967243 Phco2g02025 2 50965260 50967243 ECH
Phco6g00704 6 7016322 7017592 Phco2g02025 2 50965260 50967243 ECH
Phco2g02025 2 50965260 50967243 Phco10g01521 10 38017229 38018387 ECH