Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00103 ATGAGAACAGGAAGCTGCGCTGTGCAACAGGGTCTAACCCCGGAAGCAGCAAGCATAGTGAAGCAAGCAGTAACACTGGCGAAGCGTCGTGGGCACGCGCAAGTGACGCCTCTCCACGTGGCACACACGATGCTCTCGATCACCAACGGGCTTCTAAGAACCGCGTGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCTTTGGAGCTTTGCTTCAACGTTGCGCTGAACCGGTTACCAGCTTCAACCTCTTCCAGCCCCATGTTGCAAGGTTCTCACCACCACCACTCTCACGCTTGTCCCTCTATCTCAAACGCTTTGGTTGCTGCGTTCAAACGCGCTCAAGCACACCAGCGACGTGGATCCATTGAGAATCAACAACAACCTCTTCTGGCAGTGAAAATAGAACTCGAGCAACTCATTATTTCGATCTTGGATGACCCTAGTGTTAGCCGAGTCATGAGGGAGGCTGGGTTCTCTAGCACTCAAGTGAAAAGCAACGTTGAGCAAGCGGTTTCTTTGGAAATATGTTCTCAGAATAATGGTAGTGGTGATAACAATAATAGTAATACTAAGGCAAAGGAAAAGAGTAGTAGCGGAGAGAAAGGGTTGGTGTTGGATCCCATTAGGGGTGAGGATGTTGCTAGTGTTATTGATAATTTGGGGAGTCAGAGAAAGAGGAGTGTTGTGATAGTAGGAGAGTGTGTGACTAGTCTGGAGAGTGTAGTTAGAGGAGTGATGGAAAAGGTTGATAAAGGGGATGCTGGTGAGTGTCTTAGGGGTGTGAAGTTTATCCCTCTTTGTCTTTCTTCTTTTGGGAGTGTTTCGAGAGTTGAAGTTGAGCAAAAGGTTGAAGAGCTTAGGAGTCTTGTGAAGGCAAGTGAACATAGCAAAGGGTATGTTTTGTACTTGGGAGATCTTAAATGGGTGTTCGATTATAGAGCTCGTGGATCACAAGGGAGAGCGTGTTATTGTCCTGTGGATCACATGGTGATGGAGATTGGGAAGCTTGTGAGTGAGGTTGAAGAGAATGGTGGCAGGTTTTGGTTGATGGGTGTTGCCACTTTTCAAGCTTACATGAGATGCAAAATTGGCCAGCCATCGTTGGAGACTCTTTGGGATCTTCATCCCATTACTGTCCCTGCGGGAAGCTTGCGCTTGAGTCTCATCACTGACAGTGGTCTACAAAATGAGCCCGTAAACAAGAAAGCTGACAACAGAACGAGCTGGCTCTTACTCGAAGGAGTGGGGGATGATGAGAAACAACAACCTTGCTTGGCGGAACCTTCCACCAAGAATGAGACCGAAATTCGAAGTTTGCAAAGCAGTACTTGTAATAGTGACTCCTCAAGTTCAACCCTCCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCACCTACAATGATCAGAATTGTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAACTCTATGTGCAGTTCAATCCAAAAGCAACCTTATCCTTCTGACAAAACCCTCACATTGTCTTCAGTATCACCCTCTTCCTCAACCTCAGGCTTCTCATACGAACAACAACATTCTAATTTGCACCAAACCCATCATGAGTGGCAAGGGTCTTCACCCAAAGATTCATTGAACAACCACCATCTCTGGATCTCAAACAATGGTTGCAACAACCCCAATGAACCGACTTTGCGAGTGTACATTCCAGAGAGCAAGGACACCACAAAGCAACCATTCTCATCTCCCAACCCTAATTCCGCTTCTTCCAGTGACATCATGGAAGTGGAGCACATGAGCAGGTTCAAAGAGTTAAACTCGGAGAACTTGAAAACACTGTGCAATGCTTTGGAGAAAAAGGTGTCGTGGCAGAAGGATATAATACCAGAAATTGCTAGCACCATTTTGCAATGTCGTTCTGGCATGGTGAGGAGAAAAGGAAAAGTGAGAAACAGTGAAGAAGTGAAAGAAGAAACGTGGTTGGTCTTCCAAGGTGTTGATGTGGAAGCAAAAGAGAAAATAACTAGAGAATTGGCTCGGCTTGTTTTTGGGTCCCGCAACGACGTTGTTTCCATAGCATTGAGTAGTTTCGCGTCAACAAGAGCAGATTCAACTGAGGATTATAGCAGGAACAAAAGATCAAGAGAAGAAACAAGCTGCAGTTACATTGAGAGGTTCGCAGAAGCAGTGATGAACAACCCTCATAGAGTGTTTCTTGTTGAAGATATAGAGCAAGCGGATTATTGTTCTCAACTTGGTTTCAAAAGGGCCATGGAGAGAGGAAGAGTTGCGGATTCAAACGGTGAAGAGATTGCACTTTGTGACGCAATCATCATTCTGAGCTGTGAAAGTTTCAGTTCAAGGTCAAGGACTTGTTCTCCTTCGGTCAAACAAAAATCGATGACTGAGGAAGAAAAGAATGGTGACATTGGTAATTTGGAGGAGACAAGCCCTTGTGTTTTGGATTTGAATATTTCCATTGATGATGAGAACGAGGTTGAGGATCGATCAGTGGATGAAATTGGGCTTCTTGAATTCGTAGACAGAAAGATTATATTCAACTTTCAGGAATTGTGA 2571 0.4527 MRTGSCAVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVAHTMLSITNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHHHHSHACPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQNNGSGDNNNSNTKAKEKSSSGEKGLVLDPIRGEDVASVIDNLGSQRKRSVVIVGECVTSLESVVRGVMEKVDKGDAGECLRGVKFIPLCLSSFGSVSRVEVEQKVEELRSLVKASEHSKGYVLYLGDLKWVFDYRARGSQGRACYCPVDHMVMEIGKLVSEVEENGGRFWLMGVATFQAYMRCKIGQPSLETLWDLHPITVPAGSLRLSLITDSGLQNEPVNKKADNRTSWLLLEGVGDDEKQQPCLAEPSTKNETEIRSLQSSTCNSDSSSSTLPAWLQQYKNENKGITYNDQNCVPVGELCKKWNSMCSSIQKQPYPSDKTLTLSSVSPSSSTSGFSYEQQHSNLHQTHHEWQGSSPKDSLNNHHLWISNNGCNNPNEPTLRVYIPESKDTTKQPFSSPNPNSASSSDIMEVEHMSRFKELNSENLKTLCNALEKKVSWQKDIIPEIASTILQCRSGMVRRKGKVRNSEEVKEETWLVFQGVDVEAKEKITRELARLVFGSRNDVVSIALSSFASTRADSTEDYSRNKRSREETSCSYIERFAEAVMNNPHRVFLVEDIEQADYCSQLGFKRAMERGRVADSNGEEIALCDAIIILSCESFSSRSRTCSPSVKQKSMTEEEKNGDIGNLEETSPCVLDLNISIDDENEVEDRSVDEIGLLEFVDRKIIFNFQEL 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00103 856 MobiDBLite consensus disorder prediction 427 453 - -
Phco6g00103 856 Coils Coil 278 298 - -
Phco6g00103 856 MobiDBLite consensus disorder prediction 179 203 - -
Phco6g00103 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 782 IPR027417 -
Phco6g00103 856 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Phco6g00103 856 Gene3D - 206 382 IPR027417 -
Phco6g00103 856 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Phco6g00103 856 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Phco6g00103 856 Pfam Clp amino terminal domain, pathogenicity island component 23 53 IPR004176 -
Phco6g00103 856 Gene3D - 9 174 IPR036628 -
Phco6g00103 856 MobiDBLite consensus disorder prediction 422 453 - -
Phco6g00103 856 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 852 - -
Phco6g00103 856 MobiDBLite consensus disorder prediction 179 195 - -
Phco6g00103 856 Gene3D - 586 820 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00103 Phco-Chr6 1032928 1036822 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00103 6 1032928 1036822 Phco2g02781 2 57260413 57265392 ECH
Phco6g00103 6 1032928 1036822 Phco3g00744 3 6111234 6116520 ECH
Phco6g00103 6 1032928 1036822 Phco6g00103 6 1032928 1036822 ECH
Phco6g00103 6 1032928 1036822 Phco11g01722 11 13475785 13481834 ECH
Phco6g00103 6 1032928 1036822 Phco3g00333 3 2359810 2365277 ECH